RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 HIST2H2BEQ16778 126 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 H1FOOQ8IZA3 346 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ZNF808Q8N4W9 903 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 EDARADDQ8WWZ3 215 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 HIST1H2BHQ93079 126 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 HIST1H2BNQ99877 126 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 HIST1H2BMQ99879 126 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 MAP1LC3BQ9GZQ8 125 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 GAB2Q9UQC2 676 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 PCNX1Q96RV3 2341 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ZNF503-AS2A6NEH8 195 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 TRGC1P0CF51 173 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ARR3P36575 388 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ZFP36L1Q07352 338 aaKnown RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ZNF324BQ6AW86 544 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 PCSK4Q6UW60 755 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 COLCA1Q6ZS62 124 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 UBALD2Q8IYN6 164 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 IL22RA2Q969J5 263 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 SMIM7Q9BQ49 75 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 GFOD1Q9NXC2 390 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 ABI3Q9P2A4 366 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 DOCK10Q96BY6 2186 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 A0A087WWC5 75 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 CLEC18AA5D8T8 446 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 YKT6O15498 198 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 PPIHO43447 177 aaKnown RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 NXPH2O95156 264 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 CER1O95813 267 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 GRPP07492 148 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 CEACAM6P40199 344 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 MDH2P40926 338 aaKnown RBP8.09□□□□□ -1.11
SYNE2-213ENST00000554805 Q6ZS49 121 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 CLEC18CQ8NCF0 446 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 OR2M7Q8NG81 312 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 OR4C12Q96R67 309 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 FAM173AQ9BQD7 235 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 RNF115Q9Y4L5 304 aa8.09□□□□□ -1.11
SYNE2-213ENST00000554805 NTN3O00634 580 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 KRASP01116 189 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 PGA5P0DJD9 388 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 GFRA1P56159 465 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ARL16Q0P5N6 197 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 SSPNQ14714 243 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 CDPF1Q6NVV7 123 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 DPPA3Q6W0C5 159 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 TIPARPQ7Z3E1 657 aaKnown RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 OR5P3Q8WZ94 311 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 FRZBQ92765 325 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 TMEM45BQ96B21 275 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 POM121Q96HA1 1249 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 RCC1LQ96I51 464 aaKnown RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 SNX22Q96L94 193 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 PIGBOS1A0A0B4J2F0 54 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF737O75373 536 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 IGHV2-70P01814 119 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 CEACAM1P13688 526 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ZXDAP98168 799 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 SLC38A11Q08AI6 406 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 NUFIP2Q7Z417 695 aaKnown RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 PRO1933Q9H354 126 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 CXorf65A6NEN9 183 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 HOXA6P31267 233 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF816Q0VGE8 651 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 OR1C1Q15619 314 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ZNF525Q8N782 197 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 SLC25A22Q9H936 323 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 LIN7CQ9NUP9 197 aaKnown RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 CISD1Q9NZ45 108 aaKnown RBP8.08□□□□□ -1.12
SYNE2-213ENST00000554805 KCNIP1Q9NZI2 227 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 PRSS50Q9UI38 385 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 DMRT1Q9Y5R6 373 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 MPC1Q9Y5U8 109 aa8.08□□□□□ -1.12
SYNE2-213ENST00000554805 ACACAQ13085 2346 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 OR5B21A6NL26 309 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 B4DEV8 164 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 SOD3P08294 240 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 PMP22Q01453 160 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 NCR3LG1Q68D85 454 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-213ENST00000554805 TMEM105Q8N8V8 129 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 Q8NFD4 153 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 POM121L2Q96KW2 1035 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 OR5B12Q96R08 314 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 VAX2Q9UIW0 290 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 LAMP3Q9UQV4 416 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 ADAMTS20P59510 1910 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 SMCO3A2RU48 225 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 IFITM10A6NMD0 228 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 CYB5R3P00387 301 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-213ENST00000554805 IL2RGP31785 369 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 WDR25Q64LD2 544 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-213ENST00000554805 FAM90A2PQ658T7 463 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 RHOVQ96L33 236 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 YPEL4Q96NS1 127 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 SSX3Q99909 188 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 LINC00470Q9BZP3 86 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 DEFB127Q9H1M4 99 aa8.07□□□□□ -1.12
SYNE2-213ENST00000554805 RBKSQ9H477 322 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms