RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 SDHCQ99643 169 aaPredicted RBP5.17□□□□□ -1.58
SCFD1-212ENST00000554486 FAM234AQ9H0X4 552 aa5.17□□□□□ -1.58
SCFD1-212ENST00000554486 SLC25A10Q9UBX3 287 aaPredicted RBP5.17□□□□□ -1.58
SCFD1-212ENST00000554486 MIOXQ9UGB7 285 aa5.17□□□□□ -1.58
SCFD1-212ENST00000554486 MRPS7Q9Y2R9 242 aaKnown RBP5.17□□□□□ -1.58
SCFD1-212ENST00000554486 CELSR1Q9NYQ6 3014 aa5.17□□□□□ -1.58
SCFD1-212ENST00000554486 CSPG4Q6UVK1 2322 aa5.17□□□□□ -1.58
SCFD1-212ENST00000554486 ACANP16112 2415 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 TRBV6-6A0A0A6YYG2 114 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 TRAV39A0A0B4J263 110 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 MEIOCA2RUB1 952 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 DNAJC9-AS1A6NH13 148 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 SERPINE3A8MV23 424 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 CTDSPLO15194 276 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 PHF1O43189 567 aaPredicted RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 NDUFB3O43676 98 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 NAPSAO96009 420 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 MT-ND4P03905 459 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 SLC25A16P16260 332 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 USF1P22415 310 aaPredicted RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 PTBP1P26599 531 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 ERP29P30040 261 aaKnown RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 GLIPR1P48060 266 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 KCNJ3P48549 501 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 P2RX3P56373 397 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 ZNF45Q02386 682 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 IL18Q14116 193 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 RBM39Q14498 530 aaKnown RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 EDDM3AQ14507 147 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 ARL6IP1Q15041 203 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 PNLIPRP3Q17RR3 467 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 MIDNQ504T8 468 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 LRRC10Q5BKY1 277 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 KRBOX4Q5JUW0 171 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 SPANXN2Q5MJ10 180 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 SLC35E4Q6ICL7 350 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 ZNF880Q6PDB4 577 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 FAM131AQ6UXB0 335 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 TCF23Q7RTU1 214 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 C5orf24Q7Z6I8 188 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 TPRX1Q8N7U7 411 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 WFDC11Q8NEX6 87 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 OR5D13Q8NGL4 314 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 OR52I2Q8NH67 350 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 MRPL30Q8TCC3 161 aaKnown RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 NEK7Q8TDX7 302 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 GPX8Q8TED1 209 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 CMSS1Q9BQ75 279 aaKnown RBP5.16□□□□□ -1.58
SCFD1-212ENST00000554486 DCTN5Q9BTE1 182 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 SRRQ9GZT4 340 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 KIF25Q9UIL4 384 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 ANAPC10Q9UM13 185 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 TLN2Q9Y4G6 2542 aa5.16□□□□□ -1.58
SCFD1-212ENST00000554486 IGKV1D-8A0A087WSZ0 117 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 MEIKINA0A087WXM9 373 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 TMEM30CPA0ZSE6 113 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 ODAMA1E959 279 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 MEX3AA1L020 520 aaKnown RBP5.15□□□□□ -1.59
SCFD1-212ENST00000554486 MEIS3P1A6NDR6 274 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CYSRT1A8MQ03 144 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 A8MXK9 166 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 FAM157AC9JC47 383 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GABARAPH6UMI1 98 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 SULT1C2O00338 296 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GSTZ1O43708 216 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-212ENST00000554486 LANCL1O43813 399 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 FCGR3AP08637 254 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CD3GP09693 182 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CGB3P0DN86 165 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CGB7P0DN87 165 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 RCC1P18754 421 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-212ENST00000554486 DTYMKP23919 212 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 PRSS3P35030 304 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 NPY4RP50391 375 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 EDDM3BP56851 147 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GNG2P59768 71 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GNB2P62879 340 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 RPL31P62899 125 aaKnown RBP5.15□□□□□ -1.59
SCFD1-212ENST00000554486 PITPNAQ00169 270 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 PAX2Q02962 417 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 KRTAP1-1Q07627 177 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 ARFRP1Q13795 201 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 ESCO2Q56NI9 601 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 PYDC2Q56P42 97 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GDPD3Q7L5L3 318 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 TRAPPC6BQ86SZ2 158 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 GVQW1Q8N7I0 195 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 MAPK1IP1LQ8NDC0 245 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 LY6G5BQ8NDX9 201 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 OR13A1Q8NGR1 328 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 OR4K15Q8NH41 348 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 C8orf46Q8TAG6 207 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CCDC107Q8WV48 283 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 SMIM4Q8WVI0 70 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 S100ZQ8WXG8 99 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 MAFIPQ8WZ33 124 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 H1FXQ92522 213 aaKnown RBP5.15□□□□□ -1.59
SCFD1-212ENST00000554486 CORO2AQ92828 525 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 RAB39BQ96DA2 213 aa5.15□□□□□ -1.59
SCFD1-212ENST00000554486 REG4Q9BYZ8 158 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms