RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FAAP24Q9BTP7 215 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 G6PC2Q9NQR9 355 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 MRPL22Q9NWU5 206 aaKnown RBP6.55□□□□□ -1.36
LIMA1-216ENST00000552909 ROS1P08922 2347 aa6.55□□□□□ -1.36
LIMA1-216ENST00000552909 A0A0A6YYD4 124 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 HSPA12AO43301 675 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 SLC16A7O60669 478 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 RAD51DO75771 328 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 DIRAS3O95661 229 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 MPIG6BO95866 241 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 SCGB1D1O95968 90 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ATP6V0CP27449 155 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 OPRM1P35372 400 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF93P35789 620 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 PDLIM4P50479 330 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 RPL27P61353 136 aaKnown RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 TLE4Q04727 773 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ZP4Q12836 540 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 GUSBP1Q15486 140 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 CHRFAM7AQ494W8 412 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF880Q6PDB4 577 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 BTNL3Q6UXE8 466 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 MEX3BQ6ZN04 569 aaKnown RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 CLDND2Q8NHS1 167 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 DIRC2Q96SL1 478 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 URM1Q9BTM9 101 aaKnown RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ABHD14AQ9BUJ0 271 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 PRRG4Q9BZD6 226 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 CTDSP1Q9GZU7 261 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 TXNIPQ9H3M7 391 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 LPAR2Q9HBW0 351 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 JKAMPQ9P055 326 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 GAB2Q9UQC2 676 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 OTOGQ6ZRI0 2925 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 PRSS37A4D1T9 235 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 CRYM-AS1A6NIL9 109 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 GJE1A6NN92 205 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 A8MXE2 369 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF814B7Z6K7 855 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 TRDCB7Z8K6 153 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 HBE1P02100 147 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 CTSDP07339 412 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 P2RY6Q15077 328 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 FAM189A2Q15884 450 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 GLIPR1L1Q6UWM5 242 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 MCEMP1Q8IX19 187 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 KCNG3Q8TAE7 436 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 ARHGAP5-AS1Q96IT6 56 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 SFXN3Q9BWM7 321 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM59Q9BXS4 323 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 GPR84Q9NQS5 396 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 FKBP11Q9NYL4 201 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 HSF4Q9ULV5 492 aa6.54□□□□□ -1.36
LIMA1-216ENST00000552909 POLR3KQ9Y2Y1 108 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-216ENST00000552909 IGLV1-36A0A0B4J1U3 117 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ST8SIA3O43173 380 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 SIAH2O43255 324 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 TCF21O43680 179 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 CGAP01215 116 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 COX6B1P14854 86 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 OR10J1P30954 320 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 BRS3P32247 399 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ASCL1P50553 236 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM50BP56557 158 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 RAC3P60763 192 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 RAB11AP62491 216 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 VAMP2P63027 116 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 EWSR1Q01844 656 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 POU3F1Q03052 451 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 FAM27E3Q08E93 113 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 AARDQ4LEZ3 155 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF474Q6S9Z5 364 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF66Q6ZN08 573 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 FAM214BQ7L5A3 538 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 OR5D14Q8NGL3 314 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 EMC6Q9BV81 110 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 GAL3ST2Q9H3Q3 398 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 MED29Q9NX70 200 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 KLHL13Q9P2N7 655 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 MCTS1Q9ULC4 181 aaKnown RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 MRPS28Q9Y2Q9 187 aaKnown RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 MYO9AB2RTY4 2548 aa6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ANKRD17O75179 2603 aaKnown RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF469Q96JG9 3925 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-216ENST00000552909 LOC102723971A0A1B0GUV8 181 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 CA11O75493 328 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 SYNGR4O95473 234 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 IRF2P14316 349 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 CTLA4P16410 223 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF43P17038 809 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 CSNK1A1P48729 337 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 BIDP55957 195 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 GNMTQ14749 295 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 FBXL19-AS1Q494R0 122 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 FBXW9Q5XUX1 488 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 FBXW12Q6X9E4 464 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 TGIF2LYQ8IUE0 185 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 UEVLDQ8IX04 471 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 TUSC5Q8IXB3 177 aa6.52□□□□□ -1.36
LIMA1-216ENST00000552909 LINC01560Q8TB33 94 aa6.52□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms