RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF90Q03938 601 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 WDFY1Q8IWB7 410 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 SLC35E1Q96K37 410 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 TPPP3Q9BW30 176 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 ZNF665Q9H7R5 613 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 MYOZ1Q9NP98 299 aaPredicted RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 OOEPA6NGQ2 149 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 E9PLN8 166 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 PRR27Q6MZM9 219 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 ZNF880Q6PDB4 577 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 INO80CQ6PI98 192 aaPredicted RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 MYPOPQ86VE0 399 aaPredicted RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 OR10D4PQ8NGN7 298 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 PCDH15Q96QU1 1955 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 IGKV1-12A0A0C4DH73 117 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 ZNF716A6NP11 495 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 TOX4O94842 621 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 IGKV1D-12P01611 117 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 CRYABP02511 175 aaKnown RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 KLF14Q8TD94 323 aaPredicted RBP13.42□□□□□ -0.26
CUX1-211ENST00000546411 RND1Q92730 232 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 LEAP2Q969E1 77 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 TMEM204Q9BSN7 226 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 ZNF355PQ9NSJ1 428 aa13.42□□□□□ -0.26
CUX1-211ENST00000546411 KIF26AQ9ULI4 1882 aaPredicted RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 CLDN34H7C241 214 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 GAPDHP04406 335 aaKnown RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 ARSJQ5FYB0 599 aaPredicted RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 MARS2Q96GW9 593 aaKnown RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 TM2D1Q9BX74 207 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 DOCK11Q5JSL3 2073 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 FABP4P15090 132 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 SRSF3P84103 164 aaKnown RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 BTNL8Q6UX41 500 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 ZNF66Q6ZN08 573 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 DAZAP1Q96EP5 407 aaKnown RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 NUDT16L1Q9BRJ7 211 aaKnown RBP13.41□□□□□ -0.26
CUX1-211ENST00000546411 IGLV3-32A0A0A0MS00 114 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 LDLRAD4O15165 306 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 APELAP0DMC3 54 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 DOK5Q9P104 306 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 FREM1Q5H8C1 2179 aa13.41□□□□□ -0.26
CUX1-211ENST00000546411 A0A1B0GU03 582 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 LRRC3CA6NJW4 275 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 A8MXK9 166 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 H0YL77 283 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 TFF1P04155 84 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 ACP1P24666 158 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 CDC34P49427 236 aaPredicted RBP13.4□□□□□ -0.26
CUX1-211ENST00000546411 MRPS11P82912 194 aaKnown RBP13.4□□□□□ -0.26
CUX1-211ENST00000546411 SELENOHQ8IZQ5 122 aaKnown RBP13.4□□□□□ -0.26
CUX1-211ENST00000546411 C15orf54Q8N8G6 183 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 FAM210BQ96KR6 192 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 KCNIP2Q9NS61 270 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 GAR1Q9NY12 217 aaKnown RBP13.4□□□□□ -0.26
CUX1-211ENST00000546411 PLCE1Q9P212 2302 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 F6UZH7 168 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 GLIPR1P48060 266 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 TMEM241Q24JQ0 296 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 FGFRL1Q8N441 504 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 CACFD1Q9UGQ2 172 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 MMP9P14780 707 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 TNFRSF1AP19438 455 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 PRDX2P32119 198 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 REG1BP48304 166 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 CDK2AP1O14519 115 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 PHOX2AO14813 284 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 ERHP84090 104 aaKnown RBP13.4□□□□□ -0.26
CUX1-211ENST00000546411 ACSM6Q6P461 480 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 NABP1Q96AH0 204 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 GLRX2Q9NS18 164 aa13.4□□□□□ -0.26
CUX1-211ENST00000546411 CLDN14O95500 239 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 RAB5AP20339 215 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 TMEM108Q6UXF1 575 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 TMEM147Q9BVK8 224 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 PIEZO2Q9H5I5 2752 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 A0A1W2PRD5 423 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 A0A1W2PRF3 423 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 A0A1W2PRM7 423 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 FAM90A27PA6NNH2 459 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 SSTR5P35346 364 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 VWA1Q6PCB0 445 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 BOD1Q96IK1 185 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 REPIN1Q9BWE0 567 aaKnown RBP13.39□□□□□ -0.27
CUX1-211ENST00000546411 IGKV1-27A0A075B6S5 117 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 NEURL1O76050 574 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 TMEM11P17152 192 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 Q0VFX4 171 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 TOLLIPQ9H0E2 274 aa13.39□□□□□ -0.27
CUX1-211ENST00000546411 IGKV1D-13A0A0B4J2D9 117 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 H0Y980 276 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 NTN3O00634 580 aaPredicted RBP13.38□□□□□ -0.27
CUX1-211ENST00000546411 PAGE4O60829 102 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 YIF1AO95070 293 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 S100A8P05109 93 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 IGKV1-13P0DP09 117 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 SUPT4H1P63272 117 aaKnown RBP13.38□□□□□ -0.27
CUX1-211ENST00000546411 POM121L2Q96KW2 1035 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 OR2V2Q96R30 315 aa13.38□□□□□ -0.27
CUX1-211ENST00000546411 PNRC2Q9NPJ4 139 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms