RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HSPB6O14558 160 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 LDLRAD4O15165 306 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 SAP30O75446 220 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 HTR3BO95264 441 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 MAS1P04201 325 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 CPEP16870 476 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 SERPINA2P20848 420 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 MAPK3P27361 379 aaPredicted RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 RBM11P57052 281 aaKnown RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 RPS25P62851 125 aaKnown RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 MLLT11Q13015 90 aaPredicted RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 PAN3Q58A45 887 aaKnown RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 ACSM6Q6P461 480 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 TMEM91Q6ZNR0 172 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 LRRTM1Q86UE6 522 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 CDH26Q8IXH8 852 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 MS4A15Q8N5U1 240 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 C8orf31Q8N9H6 132 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 THRSPQ92748 146 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 UFD1Q92890 307 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 DLX4Q92988 240 aaPredicted RBP9.91□□□□□ -0.82
USP28-212ENST00000544750 MUL1Q969V5 352 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 CCDC90BQ9GZT6 254 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 METTL9Q9H1A3 318 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 TPSG1Q9NRR2 321 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 ING4Q9UNL4 249 aa9.91□□□□□ -0.82
USP28-212ENST00000544750 G3V318 75 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 C15orf65H3BRN8 121 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 UCHL1P09936 223 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 HSMCR30P0CW71 290 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 OR5H8P0DN80 308 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 CD37P11049 281 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 KCNJ3P48549 501 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 GABARAPL2P60520 117 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 SSX1Q16384 188 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 SLC22A6Q4U2R8 563 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 JAGN1Q8N5M9 183 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 NKAIN3Q8N8D7 197 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 OR52M1Q8NGK5 317 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 TMEM203Q969S6 136 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 CYYR1Q96J86 154 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 MGLLQ99685 303 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 IFT22Q9H7X7 185 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 ACOT13Q9NPJ3 140 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 BLOC1S6Q9UL45 172 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 ST3GAL6Q9Y274 331 aa9.9□□□□□ -0.82
USP28-212ENST00000544750 MRPS28Q9Y2Q9 187 aaKnown RBP9.9□□□□□ -0.82
USP28-212ENST00000544750 GEMIN2O14893 280 aaKnown RBP9.89□□□□□ -0.83
USP28-212ENST00000544750 IGHV4-30-4P0DP06 118 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 RAB9AP51151 201 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 ZNF137PP52743 207 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 GLIPR1L1Q6UWM5 242 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 ZNF367Q7RTV3 350 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 OR6Q1Q8NGQ2 317 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 PHYHIPQ92561 330 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 OR5B12Q96R08 314 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 GFI1Q99684 422 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 ALX4Q9H161 411 aaPredicted RBP9.89□□□□□ -0.83
USP28-212ENST00000544750 OR51J1Q9H342 316 aa9.89□□□□□ -0.83
USP28-212ENST00000544750 ZNF107Q9UII5 783 aaPredicted RBP9.89□□□□□ -0.83
USP28-212ENST00000544750 SLC31A2O15432 143 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 ZNF780AO75290 641 aaPredicted RBP9.88□□□□□ -0.83
USP28-212ENST00000544750 CSTBP04080 98 aaKnown RBP9.88□□□□□ -0.83
USP28-212ENST00000544750 SLURP1P55000 103 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 FABP5Q01469 135 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 SRSF7Q16629 238 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP28-212ENST00000544750 Q3ZCU0 254 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 C1orf100Q5SVJ3 147 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 AWAT2Q6E213 333 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 CEACAM19Q7Z692 300 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 LINC00596Q86U02 117 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 SUMF2Q8NBJ7 301 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 MINDY2Q8NBR6 621 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 ZNF439Q8NDP4 499 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 UQCC2Q9BRT2 126 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 TOLLIPQ9H0E2 274 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 GFOD1Q9NXC2 390 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 RCC2Q9P258 522 aaKnown RBP9.88□□□□□ -0.83
USP28-212ENST00000544750 WSB1Q9Y6I7 421 aa9.88□□□□□ -0.83
USP28-212ENST00000544750 ATP6V0E1O15342 81 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 MRPS14O60783 128 aaKnown RBP9.87□□□□□ -0.83
USP28-212ENST00000544750 OR7C1O76099 320 aaPredicted RBP9.87□□□□□ -0.83
USP28-212ENST00000544750 SLC2A2P11168 524 aaPredicted RBP9.87□□□□□ -0.83
USP28-212ENST00000544750 GTF2F2P13984 249 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 SRMP19623 302 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 GZMHP20718 246 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 ZNF134P52741 427 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 MPV17LQ2QL34 196 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 HSD17B12Q53GQ0 312 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 C19orf54Q5BKX5 351 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 SIGIRRQ6IA17 410 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 TMEM65Q6PI78 240 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 SLC25A48Q6ZT89 311 aaKnown RBP9.87□□□□□ -0.83
USP28-212ENST00000544750 SPARTQ8N0X7 666 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 Q96M66 194 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 S100A13Q99584 98 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 DPCDQ9BVM2 203 aaPredicted RBP9.87□□□□□ -0.83
USP28-212ENST00000544750 KCNK15Q9H427 330 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 BANF2Q9H503 90 aa9.87□□□□□ -0.83
USP28-212ENST00000544750 Q9H521 79 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms