RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 IRF4Q15306 451 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 GUK1Q16774 197 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 TBC1D28Q2M2D7 210 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 TMEM176BQ3YBM2 270 aaPredicted RBP3.28□□□□□ -1.88
SF3B1-212ENST00000496458 TSPO2Q5TGU0 170 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 HACD4Q5VWC8 232 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 CD200R1LQ6Q8B3 271 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 ACP7Q6ZNF0 438 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 ZNF571Q7Z3V5 609 aaPredicted RBP3.28□□□□□ -1.88
SF3B1-212ENST00000496458 LINC01551Q86U37 167 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 DHFR2Q86XF0 187 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 CPNE9Q8IYJ1 553 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 C6orf223Q8N319 242 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 METTL13Q8N6R0 699 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 BPIFB6Q8NFQ5 453 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR4F15Q8NGB8 312 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR10G3Q8NGC4 313 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR10W1Q8NGF6 305 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR51G1Q8NGK1 321 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR51E1Q8TCB6 317 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 TMEM230Q96A57 120 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 CREB3L1Q96BA8 519 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 C14orf144Q96I85 54 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 KCTD7Q96MP8 289 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 OR52B2Q96RD2 323 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 REG4Q9BYZ8 158 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 CDC42EP4Q9H3Q1 356 aaKnown RBP3.28□□□□□ -1.88
SF3B1-212ENST00000496458 SLC25A22Q9H936 323 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 FBXO6Q9NRD1 293 aaPredicted RBP3.28□□□□□ -1.88
SF3B1-212ENST00000496458 FBXL12Q9NXK8 326 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 METTL1Q9UBP6 276 aaKnown RBP3.28□□□□□ -1.88
SF3B1-212ENST00000496458 SSR3Q9UNL2 185 aa3.28□□□□□ -1.88
SF3B1-212ENST00000496458 TRAV39A0A0B4J263 110 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 A0A0B4J2A0 478 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 IGKV1D-13A0A0B4J2D9 117 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 A0A0G2JND7 137 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RBMY1BA6NDE4 496 aaKnown RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RBMY1EA6NEQ0 496 aaKnown RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 A6NIZ1 184 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 TMEM238C9JI98 176 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 M0QYV0 167 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 TNFRSF11BO00300 401 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 CXCR6O00574 342 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 FADS1O60427 444 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 PLIN3O60664 434 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 CTNSO60931 367 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 SLC25A27O95847 323 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RLN2P04090 185 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 ISG15P05161 165 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RBMY1DP0C7P1 496 aaKnown RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RBMY1A1P0DJD3 496 aaKnown RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 IGKV1-13P0DP09 117 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 CCL5P13501 91 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 MUC1P15941 1255 aaPredicted RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 GGT1P19440 569 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 KLK7P49862 253 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RAB7AP51149 207 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 CCR6P51684 374 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RND2P52198 227 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 DLX6P56179 175 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RAB38P57729 211 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RAP1BP61224 184 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 PSME3P61289 254 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 ACVR1Q04771 509 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 BIKQ13323 160 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 EIF4EBP1Q13541 118 aaPredicted RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RNASE10Q5GAN6 216 aaKnown RBP3.27□□□□□ -1.89
SF3B1-212ENST00000496458 ANKRD22Q5VYY1 191 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 LAMTOR1Q6IAA8 161 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 CALHM1Q8IU99 346 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 C9orf62Q8N4C0 152 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 OR8G5Q8NG78 346 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 OR2D3Q8NGH3 330 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 STOML3Q8TAV4 291 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 PIGXQ8TBF5 258 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 RNF185Q96GF1 192 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 TMEM56Q96MV1 263 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 WFIKKN1Q96NZ8 548 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 C20orf144Q9BQM9 153 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 PLA2G2FQ9BZM2 168 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 TRABDQ9H4I3 376 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 KCNJ16Q9NPI9 418 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 MED11Q9P086 117 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 SHPKQ9UHJ6 478 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 OPN4Q9UHM6 478 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 ST3GAL6Q9Y274 331 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 MMACHCQ9Y4U1 282 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 LAMA3Q16787 3333 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 MYO7AQ13402 2215 aa3.27□□□□□ -1.89
SF3B1-212ENST00000496458 TTC28Q96AY4 2481 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 IGLV4-69A0A075B6H9 119 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 FAM240AA0A1B0GVK7 77 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 CIB4A0PJX0 185 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 C12orf77C9JDV5 145 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 AIPO00170 330 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 FABP7O15540 132 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 SSNA1O43805 119 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 GATBO75879 557 aaKnown RBP3.26□□□□□ -1.89
SF3B1-212ENST00000496458 CD74P04233 296 aa3.26□□□□□ -1.89
SF3B1-212ENST00000496458 UGT2B7P16662 529 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms