RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CHST1O43916 411 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 IGKV1-5P01602 117 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 IZUMO4Q1ZYL8 232 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 Q6ZRG5 221 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 Q6ZRM9 215 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 RNASE11Q8TAA1 199 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 LURAP1Q96LR2 239 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 FAM212BQ9NTI7 297 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 APC2O95996 2303 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 BSNQ9UPA5 3926 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 WRBO00258 174 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 SPRY3O43610 288 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 SSTR5P35346 364 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 MRGPRGQ86SM5 289 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 MOGAT3Q86VF5 341 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 C5orf30Q96GV9 206 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 OR2D2Q9H210 308 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 ESRP2Q9H6T0 727 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 RNF150Q9ULK6 438 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 RNF212BA8MTL3 300 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 K7ENP7 123 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 PTPRZ1P23471 2315 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 PAX9P55771 341 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 RPS23P62266 143 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 BTN1A1Q13410 526 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 ATRAIDQ6UW56 229 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 ZBTB34Q8NCN2 500 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 MRPL37Q9BZE1 423 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 SH3BGRL3Q9H299 93 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 CUL9Q8IWT3 2517 aa17.65■□□□□ 0.42
CCDC88B-208ENST00000492980 CADP27708 2225 aa17.64■□□□□ 0.42
CCDC88B-208ENST00000492980 OMGP23515 440 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 CD40P25942 277 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 PPP1CCP36873 323 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 EIF4EBP1Q13541 118 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 HSD17B11Q8NBQ5 300 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 NINJ1Q92982 152 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 LRRC46Q96FV0 321 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 SEBOXQ9HB31 216 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 CACNG5Q9UF02 275 aa17.64■□□□□ 0.41
CCDC88B-208ENST00000492980 IGHV3OR15-7A0A075B7D8 119 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 DANCRP0C864 163 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 ADCYAP1P18509 176 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 ID4P47928 161 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 F2RL1P55085 397 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 CLINT1Q14677 625 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 SWI5Q1ZZU3 235 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 GFRALQ6UXV0 394 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 ITLN1Q8WWA0 313 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 DCTN5Q9BTE1 182 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 C15orf65H3BRN8 121 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 DEFA5Q01523 94 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 EDDM3AQ14507 147 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 ZNF295-AS1Q8N0V1 137 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 LYPD6BQ8NI32 183 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 TMEM231Q9H6L2 316 aa17.63■□□□□ 0.41
CCDC88B-208ENST00000492980 LHBP01229 141 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 ARHGDIBP52566 201 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 BAXQ07812 192 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 ZNF266Q14584 549 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 TRAT1Q6PIZ9 186 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 MEX3AA1L020 520 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 CST7O76096 145 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 MSMO1Q15800 293 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 ZNF808Q8N4W9 903 aaPredicted RBP17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 OR5C1Q8NGR4 320 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 SNX22Q96L94 193 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 TREM1Q9NP99 234 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 ZNF835Q9Y2P0 537 aa17.62■□□□□ 0.41
CCDC88B-208ENST00000492980 SPTBN2O15020 2390 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 IGHV3-43A0A0B4J1X8 118 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 IGHV3-43DP0DP04 118 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 MUC1P15941 1255 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 GATA4P43694 442 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 DYNLT3P51808 116 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 RPL30P62888 115 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 RFESDQ8TAC1 157 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 ELOVL5Q9NYP7 299 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 CACFD1Q9UGQ2 172 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 FAM96BQ9Y3D0 163 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 ACACAQ13085 2346 aa17.61■□□□□ 0.41
CCDC88B-208ENST00000492980 SPINT2O43291 252 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 ATG12O94817 140 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 PRR30Q53SZ7 412 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 RAB40CQ96S21 281 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 UQCC1Q9NVA1 299 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 SH3BGRL2Q9UJC5 107 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 ODAMA1E959 279 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 C16orf97H3BN30 126 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 MGST3O14880 152 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 RAMP3O60896 148 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 SELENOVP59797 346 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 HTD2P86397 168 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 C10orf91Q5T1B1 145 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 NUP37Q8NFH4 326 aa17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 SNRNP40Q96DI7 357 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-208ENST00000492980 IGHV1-46P01743 117 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 RAB5CP51148 216 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 RPL23AP62750 156 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 FGFRL1Q8N441 504 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms