RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 GZMKP49863 264 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 ZAR1Q86SH2 424 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 HDHD3Q9BSH5 251 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-212ENST00000491769 SFXN3Q9BWM7 321 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 AURKAIP1Q9NWT8 199 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-212ENST00000491769 NPFFO15130 113 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 CA11O75493 328 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 TGFAP01135 160 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 REG1AP05451 166 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 CACNG7P62955 275 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 CX3CL1P78423 397 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 OR4X2Q8NGF9 303 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 SLC25A17O43808 307 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 LIMS2Q7Z4I7 341 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 FAM24BQ8N5W8 94 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 FAM168AQ92567 244 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 ANAPC16Q96DE5 110 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 A0A1B0GUL6 1792 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 MPV17P39210 176 aa11.39□□□□□ -0.59
COL6A3-212ENST00000491769 NUTF2P61970 127 aaKnown RBP11.39□□□□□ -0.59
COL6A3-212ENST00000491769 RCC2Q9P258 522 aaKnown RBP11.39□□□□□ -0.59
COL6A3-212ENST00000491769 IL11P20809 199 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 TMEM50BP56557 158 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 ZNF256Q9Y2P7 627 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 TAF1P21675 1872 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 PSMB11A5LHX3 300 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 ISG15P05161 165 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 NMUP48645 174 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 MRM1Q6IN84 353 aaKnown RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 SLC22A18ASQ8N1D0 253 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 C1orf162Q8NEQ5 155 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 OR2T10Q8NGZ9 312 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 PRSS2P07478 247 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 IER3P46695 156 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 OR13C6PQ8NH95 151 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 MRPL24Q96A35 216 aaKnown RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 DTX4Q9Y2E6 619 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 FOXS1O43638 330 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 LIPFP07098 398 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 STAG3L2P0CL84 134 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 OR10J1P30954 320 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 STARD6P59095 220 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 MRPL30Q8TCC3 161 aaKnown RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 FOXJ2Q9P0K8 574 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 VIRMAQ69YN4 1812 aaKnown RBP11.38□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3-35A0A0C4DH35 117 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 ASPDHA6ND91 283 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 S1PR2O95136 353 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 MMD2Q8IY49 270 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 CHST5Q9GZS9 411 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 SSTR5P35346 364 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 DOCK2Q92608 1830 aa11.38□□□□□ -0.59
COL6A3-212ENST00000491769 ZNF815PA8K554 130 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 OR2H2O95918 312 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 NUDT3O95989 172 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 TRGV3P03979 118 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 RBM11P57052 281 aaKnown RBP11.37□□□□□ -0.59
COL6A3-212ENST00000491769 RPL8P62917 257 aaKnown RBP11.37□□□□□ -0.59
COL6A3-212ENST00000491769 CEACAM21Q3KPI0 293 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 SAP25Q8TEE9 199 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 LEAP2Q969E1 77 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 HSPB7Q9UBY9 170 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 CDK5RAP2Q96SN8 1893 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 LOC101059948A0A1B0GTJ6 334 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 PDE6DO43924 150 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 IGHV3-23P01764 117 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 SCAND1P57086 179 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 RELQ04864 619 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-212ENST00000491769 UQCC3Q6UW78 93 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 LYZL2Q7Z4W2 148 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 FCGR3AP08637 254 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 PEBP1P30086 187 aaKnown RBP11.37□□□□□ -0.59
COL6A3-212ENST00000491769 CSRP2Q16527 193 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 ZNF880Q6PDB4 577 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 OR8D4Q8NGM9 314 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 ADAMTSL3P82987 1691 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 DLX6P56179 175 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 KIAA0040Q15053 153 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 Q6ZNX1 250 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 SLC25A45Q8N413 288 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 BET1LQ9NYM9 111 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 CALYQ9NYX4 217 aa11.37□□□□□ -0.59
COL6A3-212ENST00000491769 SYNGR3O43761 229 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 MVDP53602 400 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 B9A039 149 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 OR2A4O95047 310 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 NPPCP23582 126 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 CRYBB2P43320 205 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 HIST1H1AQ02539 215 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-212ENST00000491769 NRN1LQ496H8 165 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 LINC00469Q8N7U9 141 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 OR2A7Q96R45 310 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 PRSS27Q9BQR3 290 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 LINC00869P0C866 280 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 FGF5P12034 268 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 CLEC7AQ9BXN2 247 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 PRO1933Q9H354 126 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 FXYD1O00168 92 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 ANOS1P23352 680 aa11.36□□□□□ -0.59
COL6A3-212ENST00000491769 EWSR1Q01844 656 aaKnown RBP eCLIP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms