RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CREB3L1Q96BA8 519 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 GHITMQ9H3K2 345 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 PALMDQ9NP74 551 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 ABCB10Q9NRK6 738 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 TMEM160Q9NX00 188 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 RDH8Q9NYR8 311 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 PSG11Q9UQ72 335 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 OR2W1Q9Y3N9 320 aa11.34□□□□□ -0.59
C9orf3-221ENST00000489562 A8MV72 311 aaPredicted RBP11.33□□□□□ -0.6
C9orf3-221ENST00000489562 RNASEK-C17orf49H0YIS7 233 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 J3QR06 171 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 AMY2AP04746 511 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 COX7A1P24310 79 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 FCGR2CP31995 323 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 BPIFB3P59826 476 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 GPR157Q5UAW9 335 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF626Q68DY1 528 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 SLC25A48Q6ZT89 311 aaKnown RBP11.33□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF439Q8NDP4 499 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 LHX4Q969G2 390 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 PRRT1Q99946 306 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 ABHD14AQ9BUJ0 271 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 TINAGL1Q9GZM7 467 aaPredicted RBP11.33□□□□□ -0.6
C9orf3-221ENST00000489562 SCP2D1Q9UJQ7 156 aa11.33□□□□□ -0.6
C9orf3-221ENST00000489562 AMMECR1Q9Y4X0 333 aaPredicted RBP11.33□□□□□ -0.6
C9orf3-221ENST00000489562 TRAV40A0A0B4J280 105 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 FAM172BPA6NC97 362 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 ODF3BA8MYP8 253 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 SLC22A5O76082 557 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 PPYP01298 95 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 IGLV1-47P01700 117 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 HNF1AP20823 631 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 NFYAP23511 347 aaPredicted RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 IL3RAP26951 378 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 GNG10P50151 68 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 LUMP51884 338 aaPredicted RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 HERV-K104P61576 105 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 HLA-DRB5Q30154 266 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 MIDNQ504T8 468 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF660Q6AZW8 331 aaPredicted RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 HCP5Q6MZN7 132 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 C16orf87Q6PH81 154 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 OR4D10Q8NGI6 311 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 NANPQ8TBE9 248 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF2Q9BSG1 426 aaPredicted RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 C11orf54Q9H0W9 315 aaPredicted RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 MMP28Q9H239 520 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 HRASLSQ9HDD0 168 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 YAE1D1Q9NRH1 226 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 SLC2A8Q9NY64 477 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 RBM7Q9Y580 266 aaKnown RBP11.32□□□□□ -0.6
C9orf3-221ENST00000489562 VPS13CQ709C8 3753 aa11.32□□□□□ -0.6
C9orf3-221ENST00000489562 IGHV1-69DA0A0B4J2H0 117 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 CENPVL3A0A0U1RRI6 287 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 AVPP01185 164 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 IGHV1-69P01742 117 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 ARG1P05089 322 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF735P0CB33 412 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 ECI1P42126 302 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 LGALS4P56470 323 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 DEFA1P59665 94 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 DEFA3P59666 94 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 KLRD1Q13241 179 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 ASAH1Q13510 395 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 CT45A1Q5HYN5 189 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 MINOS1Q5TGZ0 78 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 OR10X1Q8NGY0 326 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 OR56B4Q8NH76 319 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 TERB2Q8NHR7 220 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 CT45A3Q8NHU0 189 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 LEAP2Q969E1 77 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 MOB3AQ96BX8 217 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 SLC6A7Q99884 636 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 MCUBQ9NWR8 336 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 PIPOXQ9P0Z9 390 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 TBL2Q9Y4P3 447 aaKnown RBP11.31□□□□□ -0.6
C9orf3-221ENST00000489562 MINOS1-NBL1R4GNA1 71 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 AKAP9Q99996 3911 aa11.31□□□□□ -0.6
C9orf3-221ENST00000489562 TEP1Q99973 2627 aaKnown RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 F8P00451 2351 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 LYRM1O43325 122 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 LY6G6DO95868 133 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 FSHBP01225 129 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 IGHV3-7P01780 117 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 AADACP22760 399 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 HTR1DP28221 377 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 CEACAM3P40198 252 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF134P52741 427 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 DLX1P56177 255 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 DCTN2Q13561 401 aaKnown RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 MSMO1Q15800 293 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 FAM53AQ6NSI3 398 aaPredicted RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 FAAP20Q6NZ36 180 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 MZT2BQ6NZ67 158 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 LPCAT3Q6P1A2 487 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 CLEC9AQ6UXN8 241 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 C1orf229Q6ZS94 237 aaPredicted RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 LHFPL1Q86WI0 220 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 OR51S1Q8NGJ8 323 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms