RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MRPL30Q8TCC3 161 aaKnown RBP11.34□□□□□ -0.59
USP40-214ENST00000483519 CPT1CQ8TCG5 803 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 R3HDM4Q96D70 268 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 SF3B5Q9BWJ5 86 aaKnown RBP11.34□□□□□ -0.59
USP40-214ENST00000483519 PARLQ9H300 379 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 OR6C3Q9NZP0 311 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 SPAG17Q6Q759 2223 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 UNC13CQ8NB66 2214 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 IGKV1-6A0A0C4DH72 117 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 COX5BP10606 129 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 PSG2P11465 335 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 B4GALT1P15291 398 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 G0S2P27469 103 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 DSCR4P56555 118 aaPredicted RBP11.33□□□□□ -0.6
USP40-214ENST00000483519 PCBD1P61457 104 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 PSG4Q00888 419 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 GBGT1Q8N5D6 347 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 TAF15Q92804 592 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP40-214ENST00000483519 LOXL4Q96JB6 756 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 ELOVL1Q9BW60 279 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 RIMS4Q9H426 269 aaPredicted RBP11.33□□□□□ -0.6
USP40-214ENST00000483519 MANBALQ9NQG1 85 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 TIMM9Q9Y5J7 89 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 CNN1P51911 297 aaKnown RBP11.33□□□□□ -0.6
USP40-214ENST00000483519 NXPH1P58417 271 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 TCF15Q12870 199 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 TRIM61Q5EBN2 209 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 C1orf194Q5T5A4 169 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 SAXO1Q8IYX7 474 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 BTF3L4Q96K17 158 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 OR2H1Q9GZK4 316 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 FKBP11Q9NYL4 201 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 OR2W1Q9Y3N9 320 aa11.33□□□□□ -0.6
USP40-214ENST00000483519 TNFSF11O14788 317 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 SCGB1D1O95968 90 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 WNT2P09544 360 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 PATE4P0C8F1 98 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 RTP5Q14D33 572 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 PMS2CLQ68D20 193 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 TEX38Q6PEX7 206 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 HAPLN4Q86UW8 402 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 OR10J5Q8NHC4 309 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 CBLN4Q9NTU7 201 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 KIR2DL5BA0A0G2JN68 375 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 KIR2DL5BA0A0G2JPC4 375 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 UBE2L5PA0A1B0GUS4 154 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 GJE1A6NN92 205 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 HSPB6O14558 160 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 SCRG1O75711 98 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 MMP7P09237 267 aaPredicted RBP11.32□□□□□ -0.6
USP40-214ENST00000483519 PCP4P48539 62 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 LCN2P80188 198 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 Q6ZRM9 215 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 KIR2DL5AQ8N109 375 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 OR4C12Q96R67 309 aa11.32□□□□□ -0.6
USP40-214ENST00000483519 ASXL3Q9C0F0 2248 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 TMEM210A6NLX4 147 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 M0QZK8 103 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 VENTXO95231 258 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 TIAF1O95411 115 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 GYPAP02724 150 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 LIFP15018 202 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 TDGF1P3P51864 188 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 CARD18P57730 90 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 PRDX4Q13162 271 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 TESK1Q15569 626 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 IZUMO4Q1ZYL8 232 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 CLEC12BQ2HXU8 276 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 LYSMD4Q5XG99 296 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 PCSK4Q6UW60 755 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 MRPL52Q86TS9 123 aaKnown RBP11.31□□□□□ -0.6
USP40-214ENST00000483519 RPP25LQ8N5L8 163 aaKnown RBP11.31□□□□□ -0.6
USP40-214ENST00000483519 SPSB4Q96A44 273 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 ALKBH3Q96Q83 286 aaPredicted RBP11.31□□□□□ -0.6
USP40-214ENST00000483519 R4GN57 208 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 A0A0J9YW62 118 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 CTXND1A0A1B0GTU2 59 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 DNPH1O43598 174 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 GNB2P62879 340 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 SLC38A11Q08AI6 406 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 SPANXN5Q5MJ07 72 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.31□□□□□ -0.6
USP40-214ENST00000483519 OR4F5Q8NH21 305 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 OR4F4Q96R69 305 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 OR6C1Q96RD1 312 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 FOXB1Q99853 325 aa11.31□□□□□ -0.6
USP40-214ENST00000483519 CHD3Q12873 2000 aaKnown RBP11.31□□□□□ -0.6
USP40-214ENST00000483519 TOX3O15405 576 aaPredicted RBP11.3□□□□□ -0.6
USP40-214ENST00000483519 MBP02144 154 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 EDN3P14138 238 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 OR10J1P30954 320 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 ZNF324BQ6AW86 544 aaPredicted RBP11.3□□□□□ -0.6
USP40-214ENST00000483519 SRXN1Q9BYN0 137 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 NAGKQ9UJ70 344 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 TRAPPC2LH3BP13 241 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 ZIC3O60481 467 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 MYF5P13349 255 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 ZNF25P17030 456 aaPredicted RBP11.3□□□□□ -0.6
USP40-214ENST00000483519 NBL1P41271 181 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms