RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 ZNF818PQ6ZRF7 136 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 KDF1Q8NAX2 398 aaPredicted RBP12.16□□□□□ -0.46
CHD3-211ENST00000481999 SH3BGRL3Q9H299 93 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 TREM2Q9NZC2 230 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 DUXBA0A1W2PPF3 345 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 HSD17B6O14756 317 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 PTBP3O95758 552 aaKnown RBP12.16□□□□□ -0.46
CHD3-211ENST00000481999 HOXB1P14653 301 aaPredicted RBP12.16□□□□□ -0.46
CHD3-211ENST00000481999 PCSK4Q6UW60 755 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 WDR82Q6UXN9 313 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 C11orf1Q9H5F2 150 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 ABCA4P78363 2273 aa12.16□□□□□ -0.46
CHD3-211ENST00000481999 COLCA2A8K830 154 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 TUSC2O75896 110 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 FHITP49789 147 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 ZNF266Q14584 549 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 ZNF718Q3SXZ3 478 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 TIMM23BQ5SRD1 257 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 SELENOHQ8IZQ5 122 aaKnown RBP12.15□□□□□ -0.46
CHD3-211ENST00000481999 GAPTQ8N292 157 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 C15orf54Q8N8G6 183 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 LFNGQ8NES3 379 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 PBDC1Q9BVG4 233 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 SCRT1Q9BWW7 348 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 BCL2L14Q9BZR8 327 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 EIF5A2Q9GZV4 153 aaKnown RBP12.15□□□□□ -0.46
CHD3-211ENST00000481999 RIMS4Q9H426 269 aaPredicted RBP12.15□□□□□ -0.46
CHD3-211ENST00000481999 PLK3Q9H4B4 646 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 SPACA1Q9HBV2 294 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 ATP23Q9Y6H3 246 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 TMEM8BA6NDV4 472 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 PRRG2O14669 202 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 FAM201AQ5SY85 155 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 SLC25A31Q9H0C2 315 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 CCL28Q9NRJ3 127 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 POLDIP2Q9Y2S7 368 aa12.15□□□□□ -0.46
CHD3-211ENST00000481999 C1QL1O75973 258 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 FOLR2P14207 255 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 EGR1P18146 543 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 LMO1P25800 156 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 LINC00596Q86U02 117 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 TGIF2LYQ8IUE0 185 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 CMTM1Q8IZ96 169 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 SFXN3Q9BWM7 321 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 PLEKHF2Q9H8W4 249 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 LYRM2Q9NU23 88 aaPredicted RBP12.14□□□□□ -0.47
CHD3-211ENST00000481999 CLEC18AA5D8T8 446 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 FAM24AA6NFZ4 105 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 SPRY3O43610 288 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 PITX3O75364 302 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 HAND1O96004 215 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 UCP1P25874 307 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 AKR1D1P51857 326 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 POLR2GP62487 172 aaKnown RBP eCLIP12.14□□□□□ -0.47
CHD3-211ENST00000481999 VAMP2P63027 116 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 AESQ08117 197 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 CLEC18CQ8NCF0 446 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 MUCL1Q96DR8 90 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 RPS10P5Q9NQ39 176 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 USF3Q68DE3 2245 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 SPTBN1Q01082 2364 aaKnown RBP12.14□□□□□ -0.47
CHD3-211ENST00000481999 CSMD1Q96PZ7 3565 aa12.14□□□□□ -0.47
CHD3-211ENST00000481999 IGSF23A1L1A6 192 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 K7N7A8 449 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 ADAM20O43506 726 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 CRYAAP02489 173 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 KITLGP21583 273 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 VDAC1P21796 283 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 AKIRIN2Q53H80 203 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 TMEM182Q6ZP80 229 aaPredicted RBP12.13□□□□□ -0.47
CHD3-211ENST00000481999 ZCCHC24Q8N2G6 241 aaKnown RBP12.13□□□□□ -0.47
CHD3-211ENST00000481999 FAM213BQ8TBF2 198 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 C14orf79Q96F83 325 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 EGLN1Q9GZT9 426 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 IGHV3OR15-7A0A075B7D8 119 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 UMAD1C9J7I0 102 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 SSSCA1O60232 199 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 MMP9P14780 707 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 CLINT1Q14677 625 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 NMSQ5H8A3 153 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 TMEM171Q8WVE6 324 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 IL22RA2Q969J5 263 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 CLCC1Q96S66 551 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 TRAPPC2LQ9UL33 140 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 HRNRQ86YZ3 2850 aaPredicted RBP12.13□□□□□ -0.47
CHD3-211ENST00000481999 DSCAMO60469 2012 aa12.13□□□□□ -0.47
CHD3-211ENST00000481999 A0A1B0GW64 132 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 NXPH3O95157 252 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 RPL35P42766 123 aaKnown RBP12.12□□□□□ -0.47
CHD3-211ENST00000481999 ASCL1P50553 236 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 RAB5BP61020 215 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 ZNF146Q15072 292 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 AWAT1Q58HT5 328 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 MBNL2Q5VZF2 373 aaKnown RBP12.12□□□□□ -0.47
CHD3-211ENST00000481999 TMEM252Q8N6L7 170 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 LILRB1Q8NHL6 650 aaPredicted RBP12.12□□□□□ -0.47
CHD3-211ENST00000481999 DCTN5Q9BTE1 182 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 SLC35B3Q9H1N7 401 aa12.12□□□□□ -0.47
CHD3-211ENST00000481999 ERRFI1Q9UJM3 462 aaPredicted RBP12.12□□□□□ -0.47
CHD3-211ENST00000481999 TRBV6-6A0A0A6YYG2 114 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms