RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C11orf87Q6NUJ2 197 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 C6orf201Q7Z4U5 140 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 MS4A15Q8N5U1 240 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 OR8U1Q8NH10 309 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 RITA1Q96K30 269 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 NICN1Q9BSH3 213 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 FAAP24Q9BTP7 215 aa14.7□□□□□ -0.06
CCDC88B-206ENST00000473405 SAA2-SAA4A0A096LPE2 208 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 YPEL1O60688 119 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 SAA2P0DJI9 122 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 MYF6P23409 242 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 CNTFRP26992 372 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 PSMB8P28062 276 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 HTR2CP28335 458 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 OR3A3P47888 321 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 QRFPP83859 136 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 MMDQ15546 238 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 DEFB121Q5J5C9 76 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 LY6G6FQ5SQ64 297 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 ZNF833PQ6ZTB9 187 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 SVOPQ8N4V2 548 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 MYOZ3Q8TDC0 251 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 KCTD7Q96MP8 289 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 YPEL2Q96QA6 119 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 NABP2Q9BQ15 211 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 TMEM59Q9BXS4 323 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 IFI27L2Q9H2X8 130 aa14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 ZNF107Q9UII5 783 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-206ENST00000473405 A0A0A6YYD4 124 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 PTGES3LE9PB15 166 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 SLC22A1O15245 554 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 NAPSAO96009 420 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 CD37P11049 281 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 VDAC1P21796 283 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 LUMP51884 338 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 RAB25P57735 213 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 ACTBP60709 375 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 KIR2DS1Q14954 304 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 SPHARQ15513 63 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 GLT8D1Q68CQ7 371 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 GALMQ96C23 342 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 NEDD4LQ96PU5 975 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 TM2D1Q9BX74 207 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 VCXQ9H320 206 aa14.68□□□□□ -0.06
CCDC88B-206ENST00000473405 TMEM14DPA8MWL7 114 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 HLA-DRB1P01911 266 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 UCHL1P09936 223 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 SRMP19623 302 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 FHL3Q13643 280 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 IRF3Q14653 427 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 HSD17B12Q53GQ0 312 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 VAX1Q5SQQ9 334 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 CEACAM19Q7Z692 300 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 OR2AK2Q8NG84 335 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 KCNG3Q8TAE7 436 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 C4orf3Q8WVX3 66 aa14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 NKX1-2Q9UD57 310 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-206ENST00000473405 ATP6V0E1O15342 81 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 RGS11O94810 467 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 PPIFP30405 207 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 LIPKQ5VXJ0 399 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 ZNF880Q6PDB4 577 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 IL1F10Q8WWZ1 152 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 GFI1Q99684 422 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 B9D2Q9BPU9 175 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 ZNF251Q9BRH9 671 aa14.66□□□□□ -0.06
CCDC88B-206ENST00000473405 IGHV7-81A0A0B4J1V7 117 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 G3V318 75 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 NBR2O15453 112 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 BPNT1O95861 308 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 OR5H8P0DN80 308 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 AQP4P55087 323 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 DGCR2P98153 550 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 KIAA0141Q14154 515 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 MED22Q15528 200 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 NPBQ8NG41 125 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 OR6M1Q8NGM8 313 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 OR5M8Q8NGP6 311 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 ANKRD60Q9BZ19 345 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 PARP12Q9H0J9 701 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 KLK15Q9H2R5 256 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 OR51J1Q9H342 316 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 ABRACLQ9P1F3 81 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 LRRC42Q9Y546 428 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 RYR3Q15413 4870 aa14.65□□□□□ -0.06
CCDC88B-206ENST00000473405 ST8SIA5O15466 376 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 NDUFA3O95167 84 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 IGLV1-40P01703 118 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 BLVRBP30043 206 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 NDPQ00604 133 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 CD69Q07108 199 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 C5orf64Q2M2E5 130 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 FAM71F2Q6NXP2 309 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 FAM131AQ6UXB0 335 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 TMEM91Q6ZNR0 172 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 NRG4Q8WWG1 115 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 TMEM203Q969S6 136 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 CHCHD6Q9BRQ6 235 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 LPAR5Q9H1C0 372 aa14.64□□□□□ -0.07
CCDC88B-206ENST00000473405 GNB4Q9HAV0 340 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms