RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 C17orf58Q2M2W7 97 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 C4orf46Q504U0 113 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 FAHD2BQ6P2I3 314 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 SLC38A6Q8IZM9 456 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF525Q8N782 197 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 ADAD2Q8NCV1 583 aaKnown RBP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 OR52B4Q8NGK2 314 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 TMEM230Q96A57 120 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 NEIL1Q96FI4 390 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 FAHD2AQ96GK7 314 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 RTBDNQ9BSG5 229 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 C19orf12Q9NSK7 152 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 RDH8Q9NYR8 311 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 JPT1Q9UK76 154 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 CDC42EP3Q9UKI2 254 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 UBE2J1Q9Y385 318 aaPredicted RBP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 OR2W1Q9Y3N9 320 aa9.3□□□□□ -0.92
LINC00539-203ENST00000434601 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.3□□□□□ -0.92
LINC00539-203ENST00000434601 IGKV1D-13A0A0B4J2D9 117 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 KBTBD11-OT1A0A1B0GTJ5 212 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 HMX3A6NHT5 357 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 F5H0A9 414 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-203ENST00000434601 F2RL2O00254 374 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 GPR37O15354 613 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 HLA-AP01891 365 aaKnown RBP9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CGB3P0DN86 165 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CGB7P0DN87 165 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 IGKV1-13P0DP09 117 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 AKR1C4P17516 323 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CEACAM6P40199 344 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 PDLIM4P50479 330 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 DHODHQ02127 395 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 DHRS2Q13268 280 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 PPP1R1AQ13522 171 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF273Q14593 569 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 TMEM30BQ3MIR4 351 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 ABCA11PQ4W5N1 156 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 TMEM128Q5BJH2 165 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 LPCAT3Q6P1A2 487 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CLEC2AQ6UVW9 174 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF841Q6ZN19 808 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 LYG2Q86SG7 212 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 FAM185AQ8N0U4 392 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CCDC71LQ8N9Z2 235 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 OR52L2PQ8NGH6 319 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 RFESDQ8TAC1 157 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF431Q8TF32 576 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-203ENST00000434601 SECTM1Q8WVN6 248 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF486Q96H40 463 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-203ENST00000434601 RSRP1Q9BUV0 290 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 SLC5A7Q9GZV3 580 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 TOLLIPQ9H0E2 274 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 MED28Q9H204 178 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 GAL3ST2Q9H3Q3 398 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 PATZ1Q9HBE1 687 aaKnown RBP9.29□□□□□ -0.92
LINC00539-203ENST00000434601 OR2S2Q9NQN1 319 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 TAS2R3Q9NYW6 316 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 CLN8Q9UBY8 286 aa9.29□□□□□ -0.92
LINC00539-203ENST00000434601 NBEAL1Q6ZS30 2694 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 IGHV3-43A0A0B4J1X8 118 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 SSNA1O43805 119 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 WNT2P09544 360 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 FAM157CP0CG43 387 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 IGHV3-43DP0DP04 118 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 SLC25A16P16260 332 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 VAMP1P23763 118 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 PPP1CCP36873 323 aaKnown RBP9.28□□□□□ -0.92
LINC00539-203ENST00000434601 LUMP51884 338 aaPredicted RBP9.28□□□□□ -0.92
LINC00539-203ENST00000434601 PIGPP57054 158 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 LTC4SQ16873 150 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 CD276Q5ZPR3 534 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 AKAP14Q86UN6 197 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 FAM216AQ8WUB2 273 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 ZNF714Q96N38 554 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 PARP12Q9H0J9 701 aaKnown RBP9.28□□□□□ -0.92
LINC00539-203ENST00000434601 NARFLQ9H6Q4 476 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 LINC00574Q9H8X3 128 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 SLC2A9Q9NRM0 540 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 TMEM160Q9NX00 188 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 IDI2-AS1Q9NZ38 188 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 GNG12Q9UBI6 72 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 MALRD1Q5VYJ5 2156 aa9.28□□□□□ -0.92
LINC00539-203ENST00000434601 C9orf170A2RU37 121 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 CRYM-AS1A6NIL9 109 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 GPR31O00270 319 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 HSD17B6O14756 317 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 YPEL1O60688 119 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 CCL3L1P16619 93 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 OMGP23515 440 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 LOXL3P58215 753 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 RND3P61587 244 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 GNB2P62879 340 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 LOXL1Q08397 574 aaPredicted RBP9.27□□□□□ -0.93
LINC00539-203ENST00000434601 FCN2Q15485 313 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 TMEM249Q2WGJ8 235 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 PHLDA2Q53GA4 152 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 PRAMEF5Q5TYX0 476 aa9.27□□□□□ -0.93
LINC00539-203ENST00000434601 WDR25Q64LD2 544 aaPredicted RBP9.27□□□□□ -0.93
LINC00539-203ENST00000434601 TMEM200BQ69YZ2 307 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms