RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 MEGF9Q9H1U4 602 aa11.77□□□□□ -0.52
SGCE-204ENST00000428696 IFT46Q9NQC8 304 aa11.77□□□□□ -0.52
SGCE-204ENST00000428696 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.77□□□□□ -0.52
SGCE-204ENST00000428696 JPT1Q9UK76 154 aa11.77□□□□□ -0.52
SGCE-204ENST00000428696 RNF150Q9ULK6 438 aa11.77□□□□□ -0.52
SGCE-204ENST00000428696 DPPA5A6NC42 116 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 DTYMKP23919 212 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 BRS3P32247 399 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 PRSS3P35030 304 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 ZNF134P52741 427 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 ARPC4P59998 168 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 ACTG1P63261 375 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 DIAPH2-AS1Q14236 149 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 RNASE12Q5GAN4 147 aaKnown RBP11.77□□□□□ -0.53
SGCE-204ENST00000428696 C16orf87Q6PH81 154 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 LDLRAD3Q86YD5 345 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 GVQW1Q8N7I0 195 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 OR4A4PQ8NGN8 299 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 CAPSLQ8WWF8 208 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 TMEM158Q8WZ71 300 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 TAF15Q92804 592 aaKnown RBP eCLIP11.77□□□□□ -0.53
SGCE-204ENST00000428696 GCDHQ92947 438 aaPredicted RBP11.77□□□□□ -0.53
SGCE-204ENST00000428696 OCSTAMPQ9BR26 566 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 ABHD14AQ9BUJ0 271 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 PRDM13Q9H4Q3 707 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 CCDC59Q9P031 241 aaKnown RBP11.77□□□□□ -0.53
SGCE-204ENST00000428696 EXTL2Q9UBQ6 330 aa11.77□□□□□ -0.53
SGCE-204ENST00000428696 RBM7Q9Y580 266 aaKnown RBP11.77□□□□□ -0.53
SGCE-204ENST00000428696 IGKV1D-8A0A087WSZ0 117 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 POM121CA8CG34 1229 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 ST8SIA5O15466 376 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 YPEL1O60688 119 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 GAPDHP04406 335 aaKnown RBP11.76□□□□□ -0.53
SGCE-204ENST00000428696 CCDC144NLQ6NUI1 221 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 OR5R1Q8NH85 324 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 CMTM3Q96MX0 182 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 YPEL2Q96QA6 119 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 ADAM30Q9UKF2 790 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 POMT1Q9Y6A1 747 aa11.76□□□□□ -0.53
SGCE-204ENST00000428696 ATRQ13535 2644 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 IGKV1-6A0A0C4DH72 117 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 FAM181BA6NEQ2 426 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 HES1Q14469 280 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 KRTAP24-1Q3LI83 254 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 SLC25A48Q6ZT89 311 aaKnown RBP11.75□□□□□ -0.53
SGCE-204ENST00000428696 TMEM219Q86XT9 240 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 LAX1Q8IWV1 398 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.75□□□□□ -0.53
SGCE-204ENST00000428696 BEST4Q8NFU0 473 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 PARP12Q9H0J9 701 aaKnown RBP11.75□□□□□ -0.53
SGCE-204ENST00000428696 RBM38Q9H0Z9 239 aaKnown RBP11.75□□□□□ -0.53
SGCE-204ENST00000428696 RDH8Q9NYR8 311 aa11.75□□□□□ -0.53
SGCE-204ENST00000428696 IGHV3-72A0A0B4J1Y9 119 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 LY6LH3BQJ8 138 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 HSD17B6O14756 317 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 TIMM23O14925 209 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 GPR137BO60478 399 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 LPLP06858 475 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 RNASE1P07998 156 aaKnown RBP11.74□□□□□ -0.53
SGCE-204ENST00000428696 OR3A3P47888 321 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 HNF4GQ14541 408 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 HERPUD1Q15011 391 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 CNIH2Q6PI25 160 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 TGIF2LXQ8IUE1 241 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 TMEM86BQ8N661 226 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 DRAM1Q8N682 238 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 OR56B4Q8NH76 319 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 DGCR14Q96DF8 476 aaKnown RBP11.74□□□□□ -0.53
SGCE-204ENST00000428696 DIRAS2Q96HU8 199 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 ABHD14BQ96IU4 210 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 C19orf24Q9BVV8 132 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 C11orf54Q9H0W9 315 aaPredicted RBP11.74□□□□□ -0.53
SGCE-204ENST00000428696 NDUFA13Q9P0J0 144 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 VPREB3Q9UKI3 123 aa11.74□□□□□ -0.53
SGCE-204ENST00000428696 CLDN34H7C241 214 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 HLA-DQB1P01920 261 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 OR8U9P0C7N5 309 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 CBX5P45973 191 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 RAB7AP51149 207 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 TUSC1Q2TAM9 212 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 HOGA1Q86XE5 327 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 LINC00311Q8N616 119 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 C8orf31Q8N9H6 132 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 ZNF439Q8NDP4 499 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 OR8U1Q8NH10 309 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 FAM216AQ8WUB2 273 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 EDARADDQ8WWZ3 215 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 SLIRPQ9GZT3 109 aaKnown RBP11.73□□□□□ -0.53
SGCE-204ENST00000428696 MIXL1Q9H2W2 232 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 ANXA10Q9UJ72 324 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 ZNF221Q9UK13 617 aa11.73□□□□□ -0.53
SGCE-204ENST00000428696 OOSP1A8MZH6 123 aa11.72□□□□□ -0.53
SGCE-204ENST00000428696 CTXN2P0C2S0 81 aa11.72□□□□□ -0.53
SGCE-204ENST00000428696 FAM106CPP0CH98 169 aa11.72□□□□□ -0.53
SGCE-204ENST00000428696 NFYAP23511 347 aaPredicted RBP11.72□□□□□ -0.53
SGCE-204ENST00000428696 GPR12P47775 334 aa11.72□□□□□ -0.53
SGCE-204ENST00000428696 SRSF7Q16629 238 aaKnown RBP eCLIP11.72□□□□□ -0.53
SGCE-204ENST00000428696 Q3ZCU0 254 aa11.72□□□□□ -0.53
SGCE-204ENST00000428696 DHRS7BQ6IAN0 325 aaPredicted RBP11.72□□□□□ -0.53
SGCE-204ENST00000428696 PIFOQ8TCI5 191 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms