RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 C9orf66Q5T8R8 295 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 OGFRL1Q5TC84 451 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 RNLSQ5VYX0 342 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 GLT8D1Q68CQ7 371 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 FAM71F2Q6NXP2 309 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 LCNL1Q6ZST4 164 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 ZNF833PQ6ZTB9 187 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 MOB1BQ7L9L4 216 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 OR2AK2Q8NG84 335 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 OR52L2PQ8NGH6 319 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 MYOZ3Q8TDC0 251 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 GALMQ96C23 342 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 YPEL2Q96QA6 119 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 ZNF251Q9BRH9 671 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 TMEM59Q9BXS4 323 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 ABRACLQ9P1F3 81 aa9.04□□□□□ -0.96
SQSTM1-203ENST00000422245 SAA2-SAA4A0A096LPE2 208 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 CASQ2O14958 399 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 NBR2O15453 112 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 SAA2P0DJI9 122 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 VSIG8P0DPA2 414 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 LUMP51884 338 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 ACTBP60709 375 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 RPS27AP62979 156 aaKnown RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 GABPB1Q06547 395 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 ACSM3Q53FZ2 586 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 RBM48Q5RL73 367 aaKnown RBP9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 C1orf100Q5SVJ3 147 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 ODF3L1Q8IXM7 274 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 KCNG3Q8TAE7 436 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 NABP2Q9BQ15 211 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 SULT4A1Q9BR01 284 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 IFI27L2Q9H2X8 130 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 OR51J1Q9H342 316 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 STEAP1Q9UHE8 339 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 TENM3Q9P273 2699 aa9.03□□□□□ -0.96
SQSTM1-203ENST00000422245 SEC14L6B5MCN3 397 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 ATP6V0E1O15342 81 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 CDK1P06493 297 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 INSL4Q14641 139 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 C5orf64Q2M2E5 130 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 FAM27D1Q5T7N8 215 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 TMEM65Q6PI78 240 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 C6orf201Q7Z4U5 140 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 LRRTM1Q86UE6 522 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 SVOPQ8N4V2 548 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 CYYR1Q96J86 154 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 UBE2E2Q96LR5 201 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 TMED9Q9BVK6 235 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 TM2D1Q9BX74 207 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 CHMP1AQ9HD42 196 aaPredicted RBP9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 PARP11Q9NR21 331 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 KIAA1456Q9P272 454 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 VSIG4Q9Y279 399 aa9.02□□□□□ -0.97
SQSTM1-203ENST00000422245 IGHV7-81A0A0B4J1V7 117 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 TRAV41A0A0B4J266 112 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR5H14A6NHG9 310 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 SLC22A1O15245 554 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 NDUFA3O95167 84 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 BPNT1O95861 308 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 NAPSAO96009 420 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR8U8P0C7N1 319 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 HTR2CP28335 458 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 PPIFP30405 207 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR3A3P47888 321 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 RUNX1Q01196 453 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 UNC119Q13432 240 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 SPHARQ15513 63 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 HSD17B12Q53GQ0 312 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR10K2Q6IF99 312 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 NPBQ8NG41 125 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR11H1Q8NG94 326 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 OR6M1Q8NGM8 313 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 IL1F10Q8WWZ1 152 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 RBMXL1Q96E39 390 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 WWC2-AS2Q96NR7 200 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 ANKRD60Q9BZ19 345 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 RIMS4Q9H426 269 aaPredicted RBP9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 PIPOXQ9P0Z9 390 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 SLC23A1Q9UHI7 598 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 LSM2Q9Y333 95 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 WSB1Q9Y6I7 421 aa9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 KMT2CQ8NEZ4 4911 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-203ENST00000422245 NBEAL2Q6ZNJ1 2754 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 DNAH9Q9NYC9 4486 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 TRBV6-6A0A0A6YYG2 114 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 TMEM14DPA8MWL7 114 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 G3V318 75 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 RAB29O14966 203 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 ST8SIA5O15466 376 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 RBBP9O75884 186 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 IGLV1-40P01703 118 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 UCHL1P09936 223 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 NHLRC4P0CG21 123 aaPredicted RBP9□□□□□ -0.97
SQSTM1-203ENST00000422245 SRMP19623 302 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 CNTFRP26992 372 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 BLVRBP30043 206 aaPredicted RBP9□□□□□ -0.97
SQSTM1-203ENST00000422245 INSL3P51460 131 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 QRFPP83859 136 aa9□□□□□ -0.97
SQSTM1-203ENST00000422245 ZNF616Q08AN1 781 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms