RNA–Protein interactions for RNA: ENST00000419007.5

SEMA3B-203, Transcript of semaphorin 3B, humanhuman

TSL 2

Gene SEMA3B, Length 3,283 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-203ENST00000419007 NBEAQ8NFP9 2946 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 RIF1Q5UIP0 2472 aaKnown RBP12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 B4DEV8 164 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 SYNGR4O95473 234 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 CYB5R3P00387 301 aaPredicted RBP12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 CLN3Q13286 438 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF525Q8N782 197 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 LHX4Q969G2 390 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 THOC3Q96J01 351 aaKnown RBP12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 OR4C12Q96R67 309 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 SMIM7Q9BQ49 75 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 C12orf49Q9H741 205 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 SLC39A9Q9NUM3 307 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 CISD1Q9NZ45 108 aaKnown RBP12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 GAB2Q9UQC2 676 aa12.89□□□□□ -0.35
SEMA3B-203ENST00000419007 GTF3C1Q12789 2109 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 GATCO43716 136 aaKnown RBP12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 CLDN1O95832 211 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 IGKV1-5P01602 117 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 SP5Q6BEB4 398 aaPredicted RBP12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 OPA3Q9H6K4 179 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 BOKQ9UMX3 212 aaPredicted RBP12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 KIAA1324LA8MWY0 1029 aaPredicted RBP12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 SRSF7Q16629 238 aaKnown RBP eCLIP12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 PMS2CLQ68D20 193 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF573Q86YE8 665 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 CA5BP1Q8WTZ4 195 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 APH1AQ96BI3 265 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 RNF150Q9ULK6 438 aa12.88□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF737O75373 536 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 CD55P08174 381 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 GNG3P63215 75 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 PNRC1Q12796 327 aaPredicted RBP12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 HAPLN4Q86UW8 402 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 OR5P3Q8WZ94 311 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 SDF2L1Q9HCN8 221 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 TRAV1-1A0A0B4J248 108 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 PTBP3O95758 552 aaKnown RBP12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 OR5T1Q8NG75 326 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 POM121Q96HA1 1249 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 PACRGQ96M98 296 aaPredicted RBP12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 UFSP2Q9NUQ7 469 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 VAX2Q9UIW0 290 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 GPX4P36969 197 aaPredicted RBP12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 ZFP36L1Q07352 338 aaKnown RBP12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 SLC25A22Q9H936 323 aa12.87□□□□□ -0.35
SEMA3B-203ENST00000419007 PTPRZ1P23471 2315 aaPredicted RBP12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 IFNA1P01562 189 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 HIST1H1BP16401 226 aaKnown RBP12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 APLNRP35414 380 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 MAGEA5P43359 124 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF600Q6ZNG1 722 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 MCEMP1Q8IX19 187 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 OR13D1Q8NGV5 346 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 PRDM13Q9H4Q3 707 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 ELOA3CA0A087WX78 387 aaPredicted RBP12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 SMCO3A2RU48 225 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 NTN3O00634 580 aaPredicted RBP12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 KRASP01116 189 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 CEACAM6P40199 344 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 SLC38A11Q08AI6 406 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 DCAF12Q5T6F0 453 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 NCR3LG1Q68D85 454 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 CT55Q8WUE5 264 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 TMEM45BQ96B21 275 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 SMOC1Q9H4F8 434 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 PLA2G3Q9NZ20 509 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 ERVS71-1P61550 626 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 LRRC75BQ2VPJ9 315 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 LINC00696Q6ZRV3 163 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 MRGPRGQ86SM5 289 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 POM121L2Q96KW2 1035 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 TMEM9BQ9NQ34 198 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 DCAF16Q9NXF7 216 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 LAMP3Q9UQV4 416 aa12.86□□□□□ -0.35
SEMA3B-203ENST00000419007 RBMXL2O75526 392 aaKnown RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 TMEM41BQ5BJD5 291 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF808Q8N4W9 903 aaPredicted RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 OR10G4Q8NGN3 311 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 WDR61Q9GZS3 305 aaKnown RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 SERPINA7P05543 415 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 SELEP16581 610 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 DUSP3P51452 185 aaPredicted RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 PLGLB1Q02325 96 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 TRA2AQ13595 282 aaKnown RBP eCLIP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 ZNF585BQ52M93 769 aa12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 TIPARPQ7Z3E1 657 aaKnown RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 TAF15Q92804 592 aaKnown RBP eCLIP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 LIN7CQ9NUP9 197 aaKnown RBP12.85□□□□□ -0.35
SEMA3B-203ENST00000419007 YKT6O15498 198 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 OPN1MWP04001 364 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 OPN1MW2P0DN77 364 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 OPN1MW3P0DN78 364 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 WNT5AP41221 380 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 LHX2P50458 406 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 C1orf210Q8IVY1 113 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 FGFRL1Q8N441 504 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 OR2M7Q8NG81 312 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 MBD3L1Q8WWY6 194 aa12.84□□□□□ -0.35
SEMA3B-203ENST00000419007 MEGF10Q96KG7 1140 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms