RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GAMTQ14353 236 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF585BQ52M93 769 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PDLIM3Q53GG5 364 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 C9orf152Q5JTZ5 239 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 Q6P435 159 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF497Q6ZNH5 498 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 SSX9Q7RTT3 188 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 SUMF1Q8NBK3 374 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 OR10D3Q8NH80 312 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 FGFBP3Q8TAT2 258 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 LRFN1Q9P244 771 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PRSS50Q9UI38 385 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 LAMP3Q9UQV4 416 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 RFNGQ9Y644 331 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 A0A087X0M5 115 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 A0A1B0GX30 115 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 CD300LBA8K4G0 201 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 J3QT63 122 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF737O75373 536 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF205O95201 554 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 HLA-HP01893 362 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ESDP10768 282 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 SPCS3P61009 180 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 RPL23P62829 140 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 FOXL1Q12952 345 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TESK1Q15569 626 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 BSXQ3C1V8 233 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 Q6ZRM9 215 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM144Q7Z5S9 345 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM217Q8N7C4 229 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PSMF1Q92530 271 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 POM121L2Q96KW2 1035 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 CIB3Q96Q77 187 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ALKBH3Q96Q83 286 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM147Q9BVK8 224 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 OR51I2Q9H344 312 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 GP6Q9HCN6 339 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 DLL3Q9NYJ7 618 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ASXL3Q9C0F0 2248 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 B4E171 279 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PGA5P0DJD9 388 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 PSG2P11465 335 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 FABP4P15090 132 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 RPS18P62269 152 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 GNB2P62879 340 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TNFRSF9Q07011 255 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ARL16Q0P5N6 197 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF146Q15072 292 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 ARSJQ5FYB0 599 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 TCEAL6Q6IPX3 200 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 SSX7Q7RTT5 188 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 MRPL21Q7Z2W9 205 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 FAM58AQ8N1B3 248 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 RPP25LQ8N5L8 163 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 GMPPAQ96IJ6 420 aaPredicted RBP4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 KCNIP1Q9NZI2 227 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 OR6C3Q9NZP0 311 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 CACNG5Q9UF02 275 aa4.86□□□□□ -1.63
CCDC88A-203ENST00000412148 YLPM1P49750 1951 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 PDE6DO43924 150 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CXCL13O43927 109 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 MPDU1O75352 247 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CRYABP02511 175 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 GLI4P10075 376 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 GFI1BQ5VTD9 330 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC25A24Q6NUK1 477 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CDPF1Q6NVV7 123 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 C20orf204Q6ZNR8 217 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 C16orf82Q7Z2V1 217 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 TMEM18Q96B42 140 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 OR5B12Q96R08 314 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 OR4C12Q96R67 309 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 SMIM7Q9BQ49 75 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 RSG1Q9BU20 258 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 RBKSQ9H477 322 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 OCIAD1Q9NX40 245 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 ARL2-SNX15V9GYD0 113 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 KIR2DL5BA0A0G2JN68 375 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 KIR2DL5BA0A0G2JPC4 375 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 ZFP92A6NM28 416 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 F6UZH7 168 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 G3V3Y1 287 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 SYNGR4O95473 234 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CELA2AP08217 269 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 FOLR3P41439 243 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 GALR1P47211 349 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 DUSP3P51452 185 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 GPM6AP51674 278 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 TMPRSS3P57727 454 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 UBE2NP61088 152 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 COL10A1Q03692 680 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 SLC38A11Q08AI6 406 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 CLN3Q13286 438 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 GABRA6Q16445 453 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 LCE2DQ5TA82 110 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 KCNIP4Q6PIL6 250 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 BTNL3Q6UXE8 466 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 KIR2DL5AQ8N109 375 aa4.85□□□□□ -1.63
CCDC88A-203ENST00000412148 ZNF645Q8N7E2 425 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms