RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 SUMO3P55854 103 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 MEF2BQ02080 365 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 YRDCQ86U90 279 aaKnown RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 RPP25LQ8N5L8 163 aaKnown RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 ACTR3CQ9C0K3 210 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 GPR27Q9NS67 375 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 DCAF16Q9NXF7 216 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 SEMA5BQ9P283 1151 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 RNF115Q9Y4L5 304 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 PPIAL4AQ9Y536 164 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 UCP3P55916 312 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 HYAL1Q12794 435 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 HIST3H3Q16695 136 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 LBHQ53QV2 105 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 TMEM41BQ5BJD5 291 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 MRGPRGQ86SM5 289 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 OR5L2Q8NGL0 311 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 ZNF501Q96CX3 271 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 CDCA3Q99618 268 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 FSCN3Q9NQT6 498 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 GOLT1BQ9Y3E0 138 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 AHCTF1Q8WYP5 2266 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 TMEM131Q92545 1883 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 IGKV1-6A0A0C4DH72 117 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 KIAA1324LA8MWY0 1029 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 TGOLN2O43493 480 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 SYNGR2O43760 224 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 TUSC2O75896 110 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 GCGP01275 180 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 IGLV3-1P01715 115 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 THBDP07204 575 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 PCP4P48539 62 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 PSMB3P49720 205 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 TMEM211Q6ICI0 200 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 NFAM1Q8NET5 270 aaPredicted RBP8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 OR8G5Q8NG78 346 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 RNF150Q9ULK6 438 aa8.42□□□□□ -1.06
PTCHD4-202ENST00000398738 F2RP25116 425 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 FUT6P51993 359 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 PSG4Q00888 419 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 KCNMB1Q16558 191 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 TSTD1Q8NFU3 115 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 IMMP2LQ96T52 175 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 TMEM208Q9BTX3 173 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 TRAPPC1Q9Y5R8 145 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 MAP1BP46821 2468 aaKnown RBP8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 A0A0J9YW62 118 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 GYPAP02724 150 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 CTSSP25774 331 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 UCP1P25874 307 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 GCH1P30793 250 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 TGFBR3Q03167 851 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 CEACAM16Q2WEN9 425 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 DBX2Q6ZNG2 339 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 HAPLN4Q86UW8 402 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 ZNF525Q8N782 197 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 OR56B2PQ8NGI1 322 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 SPACA9Q96E40 222 aaPredicted RBP8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 DUSP23Q9BVJ7 150 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 PARD6AQ9NPB6 346 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 OR1A1Q9P1Q5 309 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 ATG2AQ2TAZ0 1938 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 SCRG1O75711 98 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 CCL3P10147 92 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 IRF2P14316 349 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 CNN1P51911 297 aaKnown RBP8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 ERVFC1-1P60608 527 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 FAM103A1Q9BTL3 118 aaKnown RBP8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 CTDSP1Q9GZU7 261 aa8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 MTIF3Q9H2K0 278 aaKnown RBP8.41□□□□□ -1.06
PTCHD4-202ENST00000398738 COL6A3P12111 3177 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 A0A1B0GWJ7 208 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 CLEC18AA5D8T8 446 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 LMO7DNF2Z398 122 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 SPINK4O60575 86 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 HRASP01112 189 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 KRASP01116 189 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 S100GP29377 79 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 TDGF1P3P51864 188 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 GFRA1P56159 465 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 RAB4BP61018 213 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 HNRNPKP61978 463 aaKnown RBP eCLIP8.4□□□□□ -1.062e-6■■□□□ 14.5
PTCHD4-202ENST00000398738 SLC38A11Q08AI6 406 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 OR5I1Q13606 314 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 VASH2Q86V25 355 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 CLEC18CQ8NCF0 446 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 BEND2Q8NDZ0 799 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 OR10J5Q8NHC4 309 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 DERL1Q9BUN8 251 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 SRXN1Q9BYN0 137 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 TMEM242Q9NWH2 141 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 NAGKQ9UJ70 344 aa8.4□□□□□ -1.06
PTCHD4-202ENST00000398738 B4E171 279 aa8.4□□□□□ -1.07
PTCHD4-202ENST00000398738 SYNGR1O43759 233 aa8.4□□□□□ -1.07
PTCHD4-202ENST00000398738 KBTBD11O94819 623 aa8.4□□□□□ -1.07
PTCHD4-202ENST00000398738 HPRT1P00492 218 aa8.4□□□□□ -1.07
PTCHD4-202ENST00000398738 SELEP16581 610 aa8.4□□□□□ -1.07
PTCHD4-202ENST00000398738 OTX1P32242 354 aaPredicted RBP8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms