RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 DUX4L3P0CJ86 424 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4L4P0CJ87 422 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4L5P0CJ88 424 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4L6P0CJ89 424 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4L7P0CJ90 424 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 EWSR1Q01844 656 aaKnown RBP eCLIP12.6□□□□□ -0.39
GPC3-202ENST00000394299 CLINT1Q14677 625 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4L9Q6RFH8 374 aaPredicted RBP12.6□□□□□ -0.39
GPC3-202ENST00000394299 BTNL3Q6UXE8 466 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 ARL11Q969Q4 196 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 NARS2Q96I59 477 aaKnown RBP12.6□□□□□ -0.39
GPC3-202ENST00000394299 OR2D2Q9H210 308 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 SH3BGRL3Q9H299 93 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 DUX4Q9UBX2 424 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 SPTA1P02549 2419 aa12.6□□□□□ -0.39
GPC3-202ENST00000394299 OOEPA6NGQ2 149 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 ZNF737O75373 536 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 CST7O76096 145 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 RPL30P62888 115 aaKnown RBP12.59□□□□□ -0.39
GPC3-202ENST00000394299 ID3Q02535 119 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 ATRAIDQ6UW56 229 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 OR2C3Q8N628 320 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 DCAF16Q9NXF7 216 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 LPAR3Q9UBY5 353 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 USF3Q68DE3 2245 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 IGLV3-9A0A075B6K5 115 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 RAMP3O60896 148 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 MED6O75586 246 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 JTBO76095 146 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 IGKV1-5P01602 117 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 APOC3P02656 99 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 S100GP29377 79 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 PXDC1Q5TGL8 231 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 C1orf174Q8IYL3 243 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 HSD17B11Q8NBQ5 300 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 DEFB108BQ8NET1 73 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 ABHD14BQ96IU4 210 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 RAXQ9Y2V3 346 aa12.59□□□□□ -0.39
GPC3-202ENST00000394299 DPRXA6NFQ7 191 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 C16orf97H3BN30 126 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 H3BP45 60 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 IFNL4K9M1U5 179 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 AGPAT2O15120 278 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 THBDP07204 575 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 CD80P33681 288 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 FHITP49789 147 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 UTF1Q5T230 341 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 GPR157Q5UAW9 335 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 TMEM217Q8N7C4 229 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 RNASE11Q8TAA1 199 aaKnown RBP12.58□□□□□ -0.4
GPC3-202ENST00000394299 MSRB2Q9Y3D2 182 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 CLEC18AA5D8T8 446 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 KRBOX1C9JBD0 128 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 ABCD4O14678 606 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 C1QL1O75973 258 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 CYB5R3P00387 301 aaPredicted RBP12.58□□□□□ -0.4
GPC3-202ENST00000394299 HOXD4P09016 255 aaPredicted RBP12.58□□□□□ -0.4
GPC3-202ENST00000394299 PAX9P55771 341 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 MRGPRGQ86SM5 289 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 TMEM252Q8N6L7 170 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 UBAC2Q8NBM4 344 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 CLEC18CQ8NCF0 446 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 SPIN2AQ99865 258 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 SPIN2BQ9BPZ2 258 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 ATRXP46100 2492 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 NBASA2RRP1 2371 aa12.58□□□□□ -0.4
GPC3-202ENST00000394299 PKDREJQ9NTG1 2253 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 KIAA1324LA8MWY0 1029 aaPredicted RBP12.57□□□□□ -0.4
GPC3-202ENST00000394299 ST8SIA5O15466 376 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 IGHV1-46P01743 117 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 GAPDHP04406 335 aaKnown RBP12.57□□□□□ -0.4
GPC3-202ENST00000394299 RBMXL1Q96E39 390 aaKnown RBP12.57□□□□□ -0.4
GPC3-202ENST00000394299 AKR1E2Q96JD6 320 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 ZFP57Q9NU63 452 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 CACNG5Q9UF02 275 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 FAM96BQ9Y3D0 163 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 RNF115Q9Y4L5 304 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 WRBO00258 174 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 PITX3O75364 302 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 BRWD1-AS2P59051 145 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 ZNF295-AS1Q8N0V1 137 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 IL22RA2Q969J5 263 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 PIGMQ9H3S5 423 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 GCM1Q9NP62 436 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 ZNF835Q9Y2P0 537 aa12.57□□□□□ -0.4
GPC3-202ENST00000394299 DSCAMO60469 2012 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 C15orf65H3BRN8 121 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 LHBP01229 141 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 SULT1A2P50226 295 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 EDDM3BP56851 147 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 VAMP2P63027 116 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 MZT1Q08AG7 82 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 ZNF816Q0VGE8 651 aaPredicted RBP12.56□□□□□ -0.4
GPC3-202ENST00000394299 BTN1A1Q13410 526 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 SMIM8Q96KF7 97 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 PLEKHF2Q9H8W4 249 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 PSG11Q9UQ72 335 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 DUXBA0A1W2PPF3 345 aa12.56□□□□□ -0.4
GPC3-202ENST00000394299 NUPL2O15504 423 aaKnown RBP12.56□□□□□ -0.4
GPC3-202ENST00000394299 EIF5AP63241 154 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms