RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TMEM56-RWDD3S4R434 201 aa11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 PRRC2BQ5JSZ5 2229 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-204ENST00000389857 MPDU1O75352 247 aa11.15□□□□□ -0.63
CCDC88C-204ENST00000389857 RPS20P60866 119 aaKnown RBP11.15□□□□□ -0.63
CCDC88C-204ENST00000389857 PSG6Q00889 435 aa11.15□□□□□ -0.63
CCDC88C-204ENST00000389857 RSG1Q9BU20 258 aa11.15□□□□□ -0.63
CCDC88C-204ENST00000389857 KBTBD11O94819 623 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 RNASE1P07998 156 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 DPH3Q96FX2 82 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 MARS2Q96GW9 593 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 S1PR2O95136 353 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 CKS2P33552 79 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 RPL27AP46776 148 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 SOSTQ9BQB4 213 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 H7C2G1 150 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 CCL4P13236 92 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 SIGLEC14Q08ET2 396 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 SRSF5Q13243 272 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 RAX2Q96IS3 184 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 PXMP4Q9Y6I8 212 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 ALG14Q96F25 216 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 CDX2Q99626 313 aaPredicted RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 GPR61Q9BZJ8 451 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 METTL1Q9UBP6 276 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 DCAF10Q5QP82 559 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 ADAMTSL3P82987 1691 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 DLL1O00548 723 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 LGALS3P17931 250 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 SPINK2P20155 84 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 SPNS2Q8IVW8 549 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 UCN2Q96RP3 112 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 V9GYH0 126 aa11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 TDRD15B5MCY1 1934 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-204ENST00000389857 FABP2P12104 132 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 SELENOTP62341 195 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 ZDHHC8Q9ULC8 765 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 ANKRD31Q8N7Z5 1873 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 CEACAM21Q3KPI0 293 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 ADAMTS17Q8TE56 1095 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 GALNT14Q96FL9 552 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 PHLDA3Q9Y5J5 127 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 IL9P15248 144 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 ELOVL1Q9BW60 279 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 HILPDAQ9Y5L2 63 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 TNRC6CQ9HCJ0 1690 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 H0Y980 276 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 MT-ND6P03923 174 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 UBE2V2Q15819 145 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 OR4A47Q6IF82 309 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 MAP1LC3AQ9H492 121 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 A0A0U1RQV5 110 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 PF4V1P10720 104 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 TFPI2P48307 235 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 TMPRSS3P57727 454 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 HSPB7Q9UBY9 170 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 OPN4Q9UHM6 478 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 SCN9AQ15858 1988 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 TCRBV16S1A1N1A0A5B0 115 aa11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 ZNF25P17030 456 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 EAF1Q96JC9 268 aaPredicted RBP11.13□□□□□ -0.63
CCDC88C-204ENST00000389857 COMPP49747 757 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 GGTLC2Q14390 218 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 TRAV30A0A087WSZ9 112 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 OR4C45A6NMZ5 311 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 IGF2P01344 180 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 MFAP2P55001 183 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 C1QL3Q5VWW1 255 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 LSM10Q969L4 123 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 TIMP4Q99727 224 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 MRPL13Q9BYD1 178 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 IL36RNQ9UBH0 155 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 LOC107984156A0A0G2JMH3 177 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 TNFSF10P50591 281 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 ZP4Q12836 540 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 COL5A1-AS1Q5SY13 56 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 IBA57Q5T440 356 aaKnown RBP11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 ARL17AQ8IVW1 177 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 MGST3O14880 152 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 BCL2P10415 239 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 ATP6V0CP27449 155 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 C9orf62Q8N4C0 152 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 RBFOX2O43251 390 aaKnown RBP eCLIP11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 TNFSF18Q9UNG2 199 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 LMX1BO60663 402 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 UCP2P55851 309 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 FAM106AQ4KMX7 169 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 OR11H7Q8NGC8 314 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 OR52M1Q8NGK5 317 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 ST6GAL2Q96JF0 529 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 TXNDC17Q9BRA2 123 aa11.12□□□□□ -0.63
CCDC88C-204ENST00000389857 VSIG8P0DPA2 414 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 JOSD1Q15040 202 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 CBLN2Q8IUK8 224 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 HSF4Q9ULV5 492 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 ZFC3H1O60293 1989 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 IGHV3OR16-12A0A075B7B8 117 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 C17orf51A8MQB3 221 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 K7ERU9 68 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 PPP1R17O96001 155 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 FCGR3AP08637 254 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms