RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TMEM267Q0VDI3 215 aaPredicted RBP11.25□□□□□ -0.61
CCDC3-202ENST00000378839 ACSF3Q4G176 576 aaPredicted RBP11.25□□□□□ -0.61
CCDC3-202ENST00000378839 ADAM5Q6NVV9 412 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 DRAM1Q8N682 238 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 OR2G3Q8NGZ4 309 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 SPIN2AQ99865 258 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 SPIN2BQ9BPZ2 258 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 RPS10P5Q9NQ39 176 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 POLDIP2Q9Y2S7 368 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 FBXO7Q9Y3I1 522 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 ATMQ13315 3056 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 hCG_1809904A0A1W2PP81 198 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 A0A1W2PR64 198 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 A0A1W2PRV1 198 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 PTBP3O95758 552 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CGAP01215 116 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 BRWD1-AS2P59051 145 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 LINC00205P59089 165 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 MRPL49Q13405 166 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 SPRNQ5BIV9 151 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 HAPLN4Q86UW8 402 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 RPRMLQ8N4K4 120 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 COQ2Q96H96 371 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CLCC1Q96S66 551 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 RNF150Q9ULK6 438 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 ZNF292O60281 2723 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 COLCA2A8K830 154 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 WDR1O75083 606 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 MDH2P40926 338 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 FABP6P51161 128 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 PEA15Q15121 130 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 EIF2S3LQ2VIR3 472 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CDPF1Q6NVV7 123 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 TPRX1Q8N7U7 411 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 OR8G5Q8NG78 346 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 OR52L2PQ8NGH6 319 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 STARD4Q96DR4 205 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 UFSP2Q9NUQ7 469 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CACNG5Q9UF02 275 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 KLF2Q9Y5W3 355 aaPredicted RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CNOT1A5YKK6 2376 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 C12orf77C9JDV5 145 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 WRBO00258 174 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 SH2D1BO14796 132 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 RAMP3O60896 148 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 CEBPGP53567 150 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 RPL30P62888 115 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 VAMP2P63027 116 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 WDR82Q6UXN9 313 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 ABHD14BQ96IU4 210 aa11.24□□□□□ -0.61
CCDC3-202ENST00000378839 EIF5A2Q9GZV4 153 aaKnown RBP11.24□□□□□ -0.61
CCDC3-202ENST00000378839 IGHV1-18A0A0C4DH31 117 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 SERPINE2P07093 398 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 WNT2P09544 360 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 ZNF16P17020 682 aaPredicted RBP11.23□□□□□ -0.61
CCDC3-202ENST00000378839 RAB5BP61020 215 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 Q8IYB0 196 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 EDARADDQ8WWZ3 215 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 PLSCR4Q9NRQ2 329 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 KCNS2Q9ULS6 477 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 A6NLC8 198 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 C1orf196B1AJZ1 125 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 M0R036 132 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 DLL1O00548 723 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 IAPPP10997 89 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 OR3A1P47881 315 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 EIF4EBP1Q13541 118 aaPredicted RBP11.23□□□□□ -0.61
CCDC3-202ENST00000378839 LILRB2Q8N423 598 aa11.23□□□□□ -0.61
CCDC3-202ENST00000378839 INTS1Q8N201 2190 aaKnown RBP11.23□□□□□ -0.61
CCDC3-202ENST00000378839 CHD3Q12873 2000 aaKnown RBP11.23□□□□□ -0.61
CCDC3-202ENST00000378839 TRAV17A0A0B4J275 112 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 A0A1B0GU03 582 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 A0A1B0GV90 55 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 K7EM74 188 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 TM4SF5O14894 197 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 HSPA12AO43301 675 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 LRP11Q86VZ4 500 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 DCTN5Q9BTE1 182 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 SLC25A31Q9H0C2 315 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 ZNF71Q9NQZ8 489 aaPredicted RBP11.22□□□□□ -0.61
CCDC3-202ENST00000378839 STRAPQ9Y3F4 350 aaKnown RBP11.22□□□□□ -0.61
CCDC3-202ENST00000378839 CACNA1GO43497 2377 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 CNOT4O95628 575 aaKnown RBP11.22□□□□□ -0.61
CCDC3-202ENST00000378839 IGLV1-44P01699 117 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 ARG1P05089 322 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 ACP7Q6ZNF0 438 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 IGHV2OR16-5A0A0B4J2B6 119 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 ATXN7O15265 892 aaPredicted RBP11.22□□□□□ -0.61
CCDC3-202ENST00000378839 FBP1P09467 338 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 RAB5CP51148 216 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 HABP2Q14520 560 aaPredicted RBP11.22□□□□□ -0.61
CCDC3-202ENST00000378839 ZNF266Q14584 549 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 OR2B11Q5JQS5 317 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 MOB1BQ7L9L4 216 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 LURAP1LQ8IV03 231 aa11.22□□□□□ -0.61
CCDC3-202ENST00000378839 TMEM210A6NLX4 147 aa11.21□□□□□ -0.61
CCDC3-202ENST00000378839 OR13C7P0DN81 318 aa11.21□□□□□ -0.61
CCDC3-202ENST00000378839 MMP9P14780 707 aa11.21□□□□□ -0.61
CCDC3-202ENST00000378839 GLIPR1P48060 266 aa11.21□□□□□ -0.61
CCDC3-202ENST00000378839 AWAT1Q58HT5 328 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms