RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ZNF488Q96MN9 340 aa13.52□□□□□ -0.24
CKAP4-201ENST00000378026 PSMG3Q9BT73 122 aaPredicted RBP13.52□□□□□ -0.24
CKAP4-201ENST00000378026 DUX1O43812 170 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 CLDN1O95832 211 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 IGKV1-39P01597 117 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 IGKV1D-39P04432 117 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 CCL2P13500 99 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 UBE2G2P60604 165 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 SLC38A11Q08AI6 406 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 PATZ1Q9HBE1 687 aaKnown RBP13.52□□□□□ -0.25
CKAP4-201ENST00000378026 CRIM1Q9NZV1 1036 aa13.52□□□□□ -0.25
CKAP4-201ENST00000378026 hCG_38984A0A1B0GV85 526 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 S100GP29377 79 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 TMEM42Q69YG0 159 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 KCNIP4Q6PIL6 250 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 CISD2Q8N5K1 135 aaKnown RBP13.51□□□□□ -0.25
CKAP4-201ENST00000378026 MSL2Q9HCI7 577 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 MANBALQ9NQG1 85 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 PPP1R14DQ9NXH3 145 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 KCNS2Q9ULS6 477 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 OR5I1Q13606 314 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 RHBDD2Q6NTF9 364 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 PINX1Q96BK5 328 aaKnown RBP13.51□□□□□ -0.25
CKAP4-201ENST00000378026 AGMATQ9BSE5 352 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 CHRNA10Q9GZZ6 450 aa13.51□□□□□ -0.25
CKAP4-201ENST00000378026 OPN3Q9H1Y3 402 aaPredicted RBP13.51□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DL5BA0A0G2JN68 375 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DL5BA0A0G2JPC4 375 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 TUSC2O75896 110 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DL5AQ8N109 375 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 OR10G9Q8NGN4 311 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 OR10G7Q8NGN6 311 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 AKIRIN1Q9H9L7 192 aaPredicted RBP13.5□□□□□ -0.25
CKAP4-201ENST00000378026 OR1A1Q9P1Q5 309 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 A0A0J9YW62 118 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 LOC102725191A0A1B0GVB3 256 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 GGCTO75223 188 aaKnown RBP13.5□□□□□ -0.25
CKAP4-201ENST00000378026 TRAPPC6AO75865 159 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 NAPSAO96009 420 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 TNFSF10P50591 281 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 C9orf135Q5VTT2 229 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 TMPRSS7Q7RTY8 843 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 ANAPC16Q96DE5 110 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 SRXN1Q9BYN0 137 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 IL36GQ9NZH8 169 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 PPIAL4AQ9Y536 164 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 LMO7DNF2Z398 122 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 WDR1O75083 606 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 IGKV1-5P01602 117 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 MPLP40238 635 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 ZNF573Q86YE8 665 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 IMMP2LQ96T52 175 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 DERL1Q9BUN8 251 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 ATP23Q9Y6H3 246 aa13.5□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DS1A0A191URI9 304 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 C1QTNF9P0C862 333 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 EDN3P14138 238 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DS4P43632 304 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 HYAL1Q12794 435 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 KIR2DS1Q14954 304 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 PCSK4Q6UW60 755 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 FOXL2NBQ6ZUU3 175 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 OR56B2PQ8NGI1 322 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 VN1R17PQ8TDU5 208 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 OR6C1Q96RD1 312 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 LPAR2Q9HBW0 351 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 IGLV3-32A0A0A0MS00 114 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 NPPCP23582 126 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 SLC23A3Q6PIS1 610 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 ZCCHC14Q8WYQ9 949 aaKnown RBP13.49□□□□□ -0.25
CKAP4-201ENST00000378026 CLDN23Q96B33 292 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 OR2W1Q9Y3N9 320 aa13.49□□□□□ -0.25
CKAP4-201ENST00000378026 TMEM250H0YL14 139 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 TCF21O43680 179 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 IGFBP7Q16270 282 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CEACAM16Q2WEN9 425 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 FFAR4Q5NUL3 377 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 C17orf82Q86X59 251 aaPredicted RBP13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CMTM2Q8TAZ6 248 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 DTD1Q8TEA8 209 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 TMEM204Q9BSN7 226 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CHCHD2Q9Y6H1 151 aaPredicted RBP13.48□□□□□ -0.25
CKAP4-201ENST00000378026 ADMP35318 185 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CDKN1AP38936 164 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 PPP1CBP62140 327 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CENPVQ7Z7K6 275 aaPredicted RBP13.48□□□□□ -0.25
CKAP4-201ENST00000378026 RNF138Q8WVD3 245 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 WNT5BQ9H1J7 359 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 TMEM38BQ9NVV0 291 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 MTCH1Q9NZJ7 389 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 C11orf94C9JXX5 98 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 SYNGR1O43759 233 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 CCL3P10147 92 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 SRP14P37108 136 aaKnown RBP13.48□□□□□ -0.25
CKAP4-201ENST00000378026 HNRNPKP61978 463 aaKnown RBP eCLIP13.48□□□□□ -0.25
CKAP4-201ENST00000378026 SPINK9Q5DT21 86 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 C7orf61Q8IZ16 206 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 FADS6Q8N9I5 356 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 OR5P3Q8WZ94 311 aa13.48□□□□□ -0.25
CKAP4-201ENST00000378026 NEIL1Q96FI4 390 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms