RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 EIF2S3P41091 472 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 FUT6P51993 359 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 LINC00205P59089 165 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 RPL30P62888 115 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 NAAAQ02083 359 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PAX2Q02962 417 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SRYQ05066 204 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 BAMBIQ13145 260 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PRDX4Q13162 271 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OPCMLQ14982 345 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 KLK9Q2XQG4 91 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM128Q5BJH2 165 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 RAET1LQ5VY80 246 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DNM1P34Q6PK57 102 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SELENOHQ8IZQ5 122 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 BPIFB2Q8N4F0 458 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF248Q8NDW4 579 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SEMA6DQ8NFY4 1073 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OR56B2PQ8NGI1 322 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 KCNG3Q8TAE7 436 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PPP1R1CQ8WVI7 109 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PCNPQ8WW12 178 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 MRPL24Q96A35 216 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 SEC22AQ96IW7 307 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 GINS3Q9BRX5 216 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 RAB18Q9NP72 206 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SLC2A9Q9NRM0 540 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 BEX4Q9NWD9 120 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 AKAP7Q9P0M2 348 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 DKKL1Q9UK85 242 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 KLK9Q9UKQ9 250 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DNAH17Q9UFH2 4485 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 USP9YO00507 2555 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZGRF1Q86YA3 2104 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF816-ZNF321PA0A0X1KG74 233 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF850A8MQ14 1090 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 K7EPK0 472 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 GOSR2O14653 212 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 BCL2L11O43521 198 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 MTRF1O75570 445 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 NRASP01111 189 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ARG1P05089 322 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CECR9P0C854 216 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SPP1P10451 314 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 GCH1P30793 250 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TIMP3P35625 211 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CD200P41217 278 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PRKXP51817 358 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CAPZA1P52907 286 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DEFA1P59665 94 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DEFA3P59666 94 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ADORA2A-AS1P86434 159 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF169Q14929 603 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 MSMO1Q15800 293 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PRR30Q53SZ7 412 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 ESCO2Q56NI9 601 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 C9orf135Q5VTT2 229 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TEX36Q5VZQ5 186 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TRIQKQ629K1 86 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF57Q68EA5 555 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 C11orf71Q6IPW1 123 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 RAB12Q6IQ22 244 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 HAGHLQ6PII5 290 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF841Q6ZN19 808 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 LINC00696Q6ZRV3 163 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF767PQ75MW2 155 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM220AQ7Z4H9 259 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 LINC00596Q86U02 117 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM71E2Q8N5Q1 922 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 GCSAMQ8N6F7 178 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SUMF2Q8NBJ7 301 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OR5A2Q8NGI9 324 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OR5D18Q8NGL1 313 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TSEN15Q8WW01 171 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM71F1Q96KD3 344 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 C17orf77Q96MU5 243 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM59Q9BXS4 323 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ULBP2Q9BZM5 246 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 STRADBQ9C0K7 418 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM165Q9HC07 324 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TAS2R8Q9NYW2 309 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OR1A1Q9P1Q5 309 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DMRT1Q9Y5R6 373 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 COL7A1Q02388 2944 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 KMT2AQ03164 3969 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ARHGAP32A7KAX9 2087 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 LRRK2Q5S007 2527 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 DNHD1Q96M86 4753 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 IGSF23A1L1A6 192 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 C9J4A7 227 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 K7N7A8 449 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 SDCBPO00560 298 aaPredicted RBP1.88□□□□□ -2.11
VPS54-202ENST00000354504 WNT9BO14905 357 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 XRCC2O43543 280 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 NDUFA2O43678 99 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 RBBP9O75884 186 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 RAB3DO95716 219 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 IGKV1D-33P01593 117 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 IGKV1-33P01594 117 aa1.88□□□□□ -2.11
VPS54-202ENST00000354504 CD55P08174 381 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms