RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 COL11A1P12107 1806 aaPredicted RBP10.33□□□□□ -0.76
SHROOM3-201ENST00000296043 H2BFSP57053 126 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 FOXF1Q12946 379 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 NAA38Q9BRA0 125 aaKnown RBP10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 PAXXQ9BUH6 204 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 ESDP10768 282 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 GPR183P32249 361 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 DAPP1Q9UN19 280 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 MMDQ15546 238 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 ZNF774Q6NX45 483 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 RTL10Q7L3V2 364 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 ZNF257Q9Y2Q1 563 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 F11P03951 625 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 PMELP40967 661 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 MEF2CQ06413 473 aaPredicted RBP10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 CCL26Q9Y258 94 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 A0A1B0GU03 582 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 KLK8O60259 260 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 IMMP2LQ96T52 175 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 PCOLCE2Q9UKZ9 415 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 TMEM189A5PLL7 270 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 UBE2CO00762 179 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 SFTPCP11686 197 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 DEFB132Q7Z7B7 95 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 TMEM208Q9BTX3 173 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 PLA2G3Q9NZ20 509 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 MPZL1O95297 269 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 PSG2P11465 335 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 GPR3P46089 330 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 HTR3DQ70Z44 454 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 VCX2Q9H322 139 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 FRRS1LQ9P0K9 344 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 ST8SIA1Q92185 356 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 C19orf67A6NJJ6 358 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 SPANXN1Q5VSR9 72 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 TMEM45BQ96B21 275 aa10.32□□□□□ -0.76
SHROOM3-201ENST00000296043 TRAV8-4A0A0B4J246 113 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 IGKV6-21A0A0C4DH24 114 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 MRPL52Q86TS9 123 aaKnown RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 OR8G5Q8NG78 346 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 ZNF107Q9UII5 783 aaPredicted RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 TNCP24821 2201 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 CDC42EP2O14613 210 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 OR2A4O95047 310 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 OR2A7Q96R45 310 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 MAP1LC3AQ9H492 121 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 CARHSP1Q9Y2V2 147 aaKnown RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 COL2A1P02458 1487 aaPredicted RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 DHRS3O75911 302 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 NGFP01138 241 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 C2orf83Q53S99 150 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 WDR34Q96EX3 536 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 NGBQ9NPG2 151 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 C19orf54Q5BKX5 351 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 PNKDQ8N490 385 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 SPSB1Q96BD6 273 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 DSCAML1Q8TD84 2053 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 GFRA1P56159 465 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 PRICKLE4Q2TBC4 344 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 SCAND1P57086 179 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 RUNX3Q13761 415 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 ZNF766Q5HY98 468 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 CCL28Q9NRJ3 127 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 DOCK4Q8N1I0 1966 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 CTLA4P16410 223 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 C1orf122Q6ZSJ8 110 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 SFTPA2Q8IWL1 248 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 SFTPA1Q8IWL2 248 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 FAM222BQ8WU58 562 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 VDAC1P21796 283 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 RSPO3Q9BXY4 272 aaPredicted RBP10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 TUBD1Q9UJT1 453 aa10.31□□□□□ -0.76
SHROOM3-201ENST00000296043 RPS23P62266 143 aaKnown RBP10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 OR13C6PQ8NH95 151 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 C18orf15Q96N68 181 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 A0A087WUJ7 227 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 HKR1P10072 659 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 Q8WTZ3 238 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 GMLQ99445 158 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 ATP23Q9Y6H3 246 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 DCCP43146 1447 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 IGHV3-21A0A0B4J1V1 117 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 KCPQ6ZWJ8 1503 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 TRBV9A0A0B4J1U6 114 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 FFAR1O14842 300 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 TARM1B6A8C7 271 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 PIGYQ3MUY2 71 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 DNASE2BQ8WZ79 361 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 ZNF391Q9UJN7 358 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 TRAV8-1A0A0A6YYK1 113 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 CD22P20273 847 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 GAGE2BQ13066 116 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 GAGE2EQ4V326 116 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 SLC23A3Q6PIS1 610 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 SLC52A3Q9NQ40 469 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 GAGE2DQ9UEU5 116 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 LAMTOR1Q6IAA8 161 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 AGBL5Q8NDL9 886 aa10.3□□□□□ -0.76
SHROOM3-201ENST00000296043 MRAPQ8TCY5 172 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms