RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FAM53AQ6NSI3 398 aaPredicted RBP8.55□□□□□ -1.04
LIG3-201ENST00000262327 PPP1R32Q7Z5V6 425 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ZDHHC23Q8IYP9 409 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ZNF295-AS1Q8N0V1 137 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 R3HDM4Q96D70 268 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 MALSU1Q96EH3 234 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 RPRMQ9NS64 109 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 FOXJ2Q9P0K8 574 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 CACNG5Q9UF02 275 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 MED13Q9UHV7 2174 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 CEACAM1P13688 526 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 UCP1P25874 307 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 CD82P27701 267 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 FGF12P61328 243 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ABLIM2Q6H8Q1 611 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ETFRF1Q6IPR1 90 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ZNF880Q6PDB4 577 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 MKXQ8IYA7 352 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 PLA2G3Q9NZ20 509 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 KCNS2Q9ULS6 477 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 RNF115Q9Y4L5 304 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 CACNA1HO95180 2353 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 USF3Q68DE3 2245 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 SPAARA0A1B0GVQ0 90 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 TM4SF5O14894 197 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BKO60814 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 TNFSF15O95150 251 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BJP06899 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BOP23527 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BBP33778 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BDP58876 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BCP62807 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 SRPXP78539 464 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 MRPS11P82912 194 aaKnown RBP8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST2H2BEQ16778 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 KHDC3LQ587J8 217 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.55□□□□□ -1.04
LIG3-201ENST00000262327 OR2T2Q6IF00 324 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 PCSK4Q6UW60 755 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 PSMF1Q92530 271 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BHQ93079 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 TVP23CQ96ET8 276 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 ATP5SQ99766 215 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BNQ99877 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2BMQ99879 126 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 REPIN1Q9BWE0 567 aaKnown RBP8.55□□□□□ -1.04
LIG3-201ENST00000262327 SNHG12Q9BXW3 62 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 C12orf49Q9H741 205 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 PLSCR2Q9NRY7 297 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 SIRPB1O00241 398 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 WDR1O75083 606 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 SOD3P08294 240 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 CA6P23280 308 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 F2RP25116 425 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 CYB561P49447 251 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 DMRTA1Q5VZB9 504 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 C16orf54Q6UWD8 224 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 ZNF610Q8N9Z0 462 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 NECAP1Q8NC96 275 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 MRPL30Q8TCC3 161 aaKnown RBP8.54□□□□□ -1.04
LIG3-201ENST00000262327 KCNE4Q8WWG9 221 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 ATP23Q9Y6H3 246 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 TRAV24A0A0B4J272 114 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 IGKV1-39P01597 117 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 IGKV1D-39P04432 117 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 SPANXN5Q5MJ07 72 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 FAM185AQ8N0U4 392 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 HIST1H2AAQ96QV6 131 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 PLK3Q9H4B4 646 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 LRFN1Q9P244 771 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 IL17BQ9UHF5 180 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 RNF150Q9ULK6 438 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 OTOGLQ3ZCN5 2332 aa8.54□□□□□ -1.04
LIG3-201ENST00000262327 SEC14L6B5MCN3 397 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 IFNA5P01569 189 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 TAS2R30P59541 319 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 TLE4Q04727 773 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 ZNF726P1Q15940 193 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 CEACAM21Q3KPI0 293 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 DNLZQ5SXM8 178 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 ZNF787Q6DD87 383 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 OR8G2PQ6IF36 304 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 IGF2-ASQ6U949 168 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 LINC00696Q6ZRV3 163 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 SPSB4Q96A44 273 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 GNPNAT1Q96EK6 184 aaPredicted RBP8.53□□□□□ -1.04
LIG3-201ENST00000262327 THOC3Q96J01 351 aaKnown RBP8.53□□□□□ -1.04
LIG3-201ENST00000262327 PRDM14Q9GZV8 571 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 CD300LBA8K4G0 201 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 CEBPZOSA8MTT3 80 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 TUSC2O75896 110 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 TFF1P04155 84 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 DEFA4P12838 97 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 FABP4P15090 132 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 MAGEA5P43359 124 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 HLA-DRB3P79483 266 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 ZNF506Q5JVG8 444 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 WDR25Q64LD2 544 aaPredicted RBP8.53□□□□□ -1.04
LIG3-201ENST00000262327 C1QL4Q86Z23 238 aa8.53□□□□□ -1.04
LIG3-201ENST00000262327 BEND2Q8NDZ0 799 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms