RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HSPB9Q9BQS6 159 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 OR1A1Q9P1Q5 309 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 FREM1Q5H8C1 2179 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 AQP7P3A6NL99 342 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 GCSAMLQ5JQS6 135 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 DNLZQ5SXM8 178 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 CYP2G1PQ6ZSU1 146 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 OR5P3Q8WZ94 311 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 PHF7Q9BWX1 381 aaPredicted RBP12.25□□□□□ -0.45
SDC1-201ENST00000254351 RNF150Q9ULK6 438 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 SIRPB1O00241 398 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 ETV2O00321 342 aaPredicted RBP12.25□□□□□ -0.45
SDC1-201ENST00000254351 FRMD6-AS1P0C7T7 363 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 CBLN1P23435 193 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 ACTL10Q5JWF8 245 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 ETFRF1Q6IPR1 90 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 ANKRD37Q7Z713 158 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 C11orf42Q8N5U0 333 aa12.25□□□□□ -0.45
SDC1-201ENST00000254351 NTF4P34130 210 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 FASLGP48023 281 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 HIST1H3AP68431 136 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 RPP30P78346 268 aaKnown RBP12.24□□□□□ -0.45
SDC1-201ENST00000254351 MMDQ15546 238 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 FOXJ2Q9P0K8 574 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 A0A096LPE4 126 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 A0A1W2PPZ6 126 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 NPIPB13A6NJU9 1138 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 NPIPB4C9JG80 1138 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 IGLV3-1P01715 115 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 F2RP25116 425 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 KRTDAPP60985 99 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 DCAF10Q5QP82 559 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 FAM53AQ6NSI3 398 aaPredicted RBP12.24□□□□□ -0.45
SDC1-201ENST00000254351 LHFPL2Q6ZUX7 228 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 MCEMP1Q8IX19 187 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 ZNF709Q8N972 641 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 ZNF114Q8NC26 417 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OR2M3Q8NG83 312 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 SGMS2Q8NHU3 365 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OIT3Q8WWZ8 545 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 ACY3Q96HD9 319 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 GUCD1Q96NT3 240 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 CLEC18AA5D8T8 446 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 KRASP01116 189 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 UCP1P25874 307 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OR10J1P30954 320 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 SLC35B1P78383 322 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 HIST3H3Q16695 136 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 CLEC18CQ8NCF0 446 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OR10G4Q8NGN3 311 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OR10G9Q8NGN4 311 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 OR10G7Q8NGN6 311 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 CMTM2Q8TAZ6 248 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 RASL10BQ96S79 203 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 SAMD10Q9BYL1 202 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 ZDHHC11Q9H8X9 412 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 CLN8Q9UBY8 286 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 TCFL5Q9UL49 500 aa12.24□□□□□ -0.45
SDC1-201ENST00000254351 NDUFB4O95168 129 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 NAPSAO96009 420 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 ADMP35318 185 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 PTGDSP41222 190 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 SLC38A11Q08AI6 406 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 DAZAP2Q15038 168 aaPredicted RBP12.23□□□□□ -0.45
SDC1-201ENST00000254351 RNF151Q2KHN1 245 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 ATOH7Q8N100 152 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 OR5L2Q8NGL0 311 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 OR1F12Q8NHA8 337 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 ZNF501Q96CX3 271 aaPredicted RBP12.23□□□□□ -0.45
SDC1-201ENST00000254351 DNAJC4Q9NNZ3 241 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 DSPP15924 2871 aaKnown RBP12.23□□□□□ -0.45
SDC1-201ENST00000254351 TFF3Q07654 80 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 Q6ZWC4 215 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 TAF15Q92804 592 aaKnown RBP eCLIP12.23□□□□□ -0.45
SDC1-201ENST00000254351 DEFB126Q9BYW3 111 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 OR2J1Q9GZK6 312 aa12.23□□□□□ -0.45
SDC1-201ENST00000254351 DOCK10Q96BY6 2186 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 TRAV38-1A0A0B4J264 116 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 A0A1W2PPC4 97 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 BRS3P32247 399 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 ATP5G3P48201 142 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 FFAR4Q5NUL3 377 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 PRR31Q5SQ13 230 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 TMEM211Q6ICI0 200 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 WDR61Q9GZS3 305 aaKnown RBP12.22□□□□□ -0.45
SDC1-201ENST00000254351 GTF3C1Q12789 2109 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 COL4A2P08572 1712 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 MAP1BP46821 2468 aaKnown RBP12.22□□□□□ -0.45
SDC1-201ENST00000254351 TMEM210A6NLX4 147 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 C11orf94C9JXX5 98 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 IGKV1-39P01597 117 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 IGKV1D-39P04432 117 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 NPPCP23582 126 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 CCKARP32238 428 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 HBG1P69891 147 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 HBG2P69892 147 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 PSG4Q00888 419 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 ACOT6Q3I5F7 207 aaPredicted RBP12.22□□□□□ -0.45
SDC1-201ENST00000254351 KCNIP4Q6PIL6 250 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 VASH2Q86V25 355 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms