RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NUS1Q96E22 293 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 WFDC6Q9BQY6 131 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM70Q9BUB7 260 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 VN1R3Q9BXE9 311 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 NPFFR1Q9GZQ6 430 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 HES4Q9HCC6 221 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 BTAF1O14981 1849 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TRAV38-1A0A0B4J264 116 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TEX48A0A1B0GUV7 120 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 MBLAC1A4D2B0 266 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE12JA6NER3 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 H3BRM9 83 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE7O76087 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE12FP0CL80 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE12GP0CL81 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE12IP0CL82 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF17P17021 662 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 G6PCP35575 357 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 CTXN1P60606 82 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 RPL32P62910 135 aaKnown RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GAGE4Q13068 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TCEAL8Q8IYN2 117 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 OR4A5Q8NH83 315 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 LINC00615Q96LM1 132 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 C4orf45Q96LM5 186 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 AGMATQ9BSE5 352 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 QTRT1Q9BXR0 403 aaKnown RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 NAA60Q9H7X0 242 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 WDR54Q9H977 334 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GP6Q9HCN6 339 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 SH2D2AQ9NP31 389 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 PLA2G2EQ9NZK7 142 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 JPT1Q9UK76 154 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 YTHDF2Q9Y5A9 579 aaKnown RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TRBV5-7A0A0A0MS05 114 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TRAV1-1A0A0B4J248 108 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 NDUFS4O43181 175 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 LAMTOR5O43504 91 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 HBZP02008 142 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 SMIM13P0DJ93 91 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GLI4P10075 376 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 EMP1P54849 157 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 CCL7P80098 99 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TIMM23BQ5SRD1 257 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM136Q6ZRR5 245 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 LINC00696Q6ZRV3 163 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 FAM169BQ8N8A8 192 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF681Q96N22 645 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 MAP1LC3CQ9BXW4 147 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 NPVFQ9HCQ7 196 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 MBNL3Q9NUK0 354 aaKnown RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ANKRD10Q9NXR5 420 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 B4GALT7Q9UBV7 327 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TNFRSF18Q9Y5U5 241 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 SOX1O00570 391 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 NTN1O95631 604 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 CA3P07451 260 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ZGLP1P0C6A0 271 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 CA7P43166 264 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ATP5J2P56134 94 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GRB2P62993 217 aaKnown RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 Q0VG73 95 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 OR10J3Q5JRS4 329 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF841Q6ZN19 808 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 PAQR9Q6ZVX9 377 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ARHGEF39Q8N4T4 335 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM252Q8N6L7 170 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 OR13C6PQ8NH95 151 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 CLDN23Q96B33 292 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 RASL10BQ96S79 203 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 SCRT1Q9BWW7 348 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 OR10A2Q9H208 303 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 KLHDC2Q9Y2U9 406 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1B0GTH9 108 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 ADAM20O43506 726 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 OR7C1O76099 320 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 SRIP30626 198 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 FOXL1Q12952 345 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 C2orf73Q8N5S3 287 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-216ENST00000637968 PLPPR1Q8TBJ4 325 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 IGSF8Q969P0 613 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 RNF183Q96D59 192 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 GLIPR2Q9H4G4 154 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 NECAP2Q9NVZ3 263 aa4.98□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1W2PRU2 124 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 SHISA7A6NL88 538 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 C11orf94C9JXX5 98 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 ETV2O00321 342 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 HLA-DQA1P01909 254 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 SRFP11831 508 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 BLVRBP30043 206 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-216ENST00000637968 RHOBP62745 196 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 SERF2P84101 59 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 WDR38Q5JTN6 314 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 FAM78AQ5JUQ0 283 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 OR4C11Q6IEV9 310 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 GLIPR1L1Q6UWM5 242 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM64Q6YI46 380 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 LIAT1Q6ZQX7 453 aa4.97□□□□□ -1.61
SCN1A-216ENST00000637968 FAM19A2Q8N3H0 131 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms