RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC23A1Q9UHI7 598 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 ZNF785A8K8V0 405 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 BAG2O95816 211 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 CSTBP04080 98 aaKnown RBP10.93□□□□□ -0.66
CLN3-249ENST00000636685 KRT8P05787 483 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 RPSAP08865 295 aaKnown RBP10.93□□□□□ -0.66
CLN3-249ENST00000636685 GZMHP20718 246 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 TNFRSF9Q07011 255 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 DYRK1AQ13627 763 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 SPATS1Q496A3 300 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 CD200R1LQ6Q8B3 271 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 CYP2R1Q6VVX0 501 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 BCDIN3DQ7Z5W3 292 aaKnown RBP10.93□□□□□ -0.66
CLN3-249ENST00000636685 PPP1R27Q86WC6 154 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 CCDC107Q8WV48 283 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 TBX5Q99593 518 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 ADGRL4Q9HBW9 690 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 CLN6Q9NWW5 311 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 GAB2Q9UQC2 676 aa10.93□□□□□ -0.66
CLN3-249ENST00000636685 FCN1O00602 326 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 LANCL1O43813 399 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 NDUFA3O95167 84 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 TMEM225BP0DP42 221 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 OSMP13725 252 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 ZNF20P17024 532 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 KCNJ3P48549 501 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 TMEM267Q0VDI3 215 aaPredicted RBP10.92□□□□□ -0.66
CLN3-249ENST00000636685 CD300EQ496F6 205 aaPredicted RBP10.92□□□□□ -0.66
CLN3-249ENST00000636685 LAX1Q8IWV1 398 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 TCEANCQ8N8B7 351 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 NPBQ8NG41 125 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 OR10V1Q8NGI7 309 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 OR13C9Q8NGT0 318 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 OR10AC1Q8NH08 325 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 PHLDA1Q8WV24 401 aaPredicted RBP10.92□□□□□ -0.66
CLN3-249ENST00000636685 RDH12Q96NR8 316 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 FBXL15Q9H469 300 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 SLA2Q9H6Q3 261 aa10.92□□□□□ -0.66
CLN3-249ENST00000636685 C13orf42A0A1B0GVH6 325 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 UBCP0CG48 685 aaKnown RBP10.91□□□□□ -0.66
CLN3-249ENST00000636685 ATP6V1B2P21281 511 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 PIGYQ3MUY2 71 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 LINC00336Q6ZUF6 198 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 SUMF2Q8NBJ7 301 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 LFNGQ8NES3 379 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 OR2K2Q8NGT1 345 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 NRG4Q8WWG1 115 aa10.91□□□□□ -0.66
CLN3-249ENST00000636685 DPCDQ9BVM2 203 aaPredicted RBP10.91□□□□□ -0.66
CLN3-249ENST00000636685 MRPL20Q9BYC9 149 aaKnown RBP10.91□□□□□ -0.66
CLN3-249ENST00000636685 TMEM30CPA0ZSE6 113 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 METTL15A6NJ78 407 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 NDUFB8O95169 186 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 DBTP11182 482 aaKnown RBP10.9□□□□□ -0.66
CLN3-249ENST00000636685 CD40LGP29965 261 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 IL13RA2Q14627 380 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 Q3ZCU0 254 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 AKIRIN2Q53H80 203 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 GGTLC1Q9BX51 225 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 ZNF355PQ9NSJ1 428 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 GNG12Q9UBI6 72 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 RNF150Q9ULK6 438 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 DHDHQ9UQ10 334 aa10.9□□□□□ -0.66
CLN3-249ENST00000636685 M0R129 80 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 CASQ2O14958 399 aaPredicted RBP10.89□□□□□ -0.67
CLN3-249ENST00000636685 PRKYO43930 277 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 MITFO75030 526 aaPredicted RBP10.89□□□□□ -0.67
CLN3-249ENST00000636685 TRBV12-3P01733 135 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 MT-ND2P03891 347 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 ALDH3A2P51648 485 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 DEFA5Q01523 94 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 FLOT2Q14254 428 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 TRIM25Q14258 630 aaKnown RBP10.89□□□□□ -0.67
CLN3-249ENST00000636685 GUCA2BQ16661 112 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 ELP2Q6IA86 826 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 ZNF184Q99676 751 aaPredicted RBP10.89□□□□□ -0.67
CLN3-249ENST00000636685 TEX12Q9BXU0 123 aa10.89□□□□□ -0.67
CLN3-249ENST00000636685 TCRBV5S2A0A599 114 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 MAGEB3O15480 346 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 ORC5O43913 435 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 FASP25445 335 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 PLGLAQ15195 96 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 TATDN3Q17R31 274 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 MOGAT2Q3SYC2 334 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 WFDC3Q8IUB2 231 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 OR10K1Q8NGX5 313 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 PYDC1Q8WXC3 89 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 CCDC124Q96CT7 223 aaKnown RBP10.88□□□□□ -0.67
CLN3-249ENST00000636685 ASB9Q96DX5 294 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 CLCC1Q96S66 551 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 MAGIXQ9H6Y5 334 aa10.88□□□□□ -0.67
CLN3-249ENST00000636685 A0A1W2PQL4 384 aaPredicted RBP10.87□□□□□ -0.67
CLN3-249ENST00000636685 MSGN1A6NI15 193 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 RRHO14718 337 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 KISS1Q15726 138 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 RPEL1Q2QD12 228 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 TMEM244Q5VVB8 128 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 ODF3L1Q8IXM7 274 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 HS3ST5Q8IZT8 346 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 POC5Q8NA72 575 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 OR51A4Q8NGJ6 313 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms