RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PACRGQ96M98 296 aaPredicted RBP12.16□□□□□ -0.46
CPSF1-212ENST00000616140 FAM206AQ9NX38 181 aa12.16□□□□□ -0.46
CPSF1-212ENST00000616140 FAM157CP0CG43 387 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 NPY1RP25929 384 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 ANKRD55Q3KP44 614 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 SMUG1Q53HV7 270 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 KHDC3LQ587J8 217 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 CXorf66Q5JRM2 361 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-212ENST00000616140 PMS2CLQ68D20 193 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 AQP3Q92482 292 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 RSG1Q9BU20 258 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 ANGPTL4Q9BY76 406 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 TTTY12Q9BZ98 90 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 TLNRD1Q9H1K6 362 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 NRXN2Q9P2S2 1712 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 CASP8AP2Q9UKL3 1982 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM183BQ1AE95 376 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 RPEL1Q2QD12 228 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 INO80CQ6PI98 192 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-212ENST00000616140 PRSS3P2Q8NHM4 247 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 SAP30LQ9HAJ7 183 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 TMEM74BQ9NUR3 256 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 FGF12P61328 243 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 LYZP61626 148 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 CEACAM21Q3KPI0 293 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 ZBTB34Q8NCN2 500 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 SCARF2Q96GP6 870 aaPredicted RBP12.15□□□□□ -0.46
CPSF1-212ENST00000616140 SIRT7Q9NRC8 400 aa12.15□□□□□ -0.46
CPSF1-212ENST00000616140 PRRX1P54821 245 aa12.15□□□□□ -0.47
CPSF1-212ENST00000616140 C19orf48Q6RUI8 117 aa12.15□□□□□ -0.47
CPSF1-212ENST00000616140 TMEM251Q8N6I4 163 aa12.15□□□□□ -0.47
CPSF1-212ENST00000616140 HSF4Q9ULV5 492 aa12.15□□□□□ -0.47
CPSF1-212ENST00000616140 OTOFQ9HC10 1997 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 DEDDO75618 318 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 PRF1P14222 555 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 MDKP21741 143 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-212ENST00000616140 TIPARPQ7Z3E1 657 aaKnown RBP12.14□□□□□ -0.47
CPSF1-212ENST00000616140 HARBI1Q96MB7 349 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 C5orf66Q9H5L9 145 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 RNF7Q9UBF6 113 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 A0A087X0M5 115 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 A0A1B0GX30 115 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 A0A1W2PPE3 182 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 SYNGR1O43759 233 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 IGKV3-11P04433 115 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 NAT1P18440 290 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 G6PC2Q9NQR9 355 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 ELOA3CA0A087WX78 387 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-212ENST00000616140 SPAARA0A1B0GVQ0 90 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 EPOPA6NHQ4 379 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 SNAI3Q3KNW1 292 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 WDR73Q6P4I2 378 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 PDPNQ86YL7 162 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 TCTEX1D1Q8N7M0 179 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 OR1B1Q8NGR6 318 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 CA5BP1Q8WTZ4 195 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 ANAPC16Q96DE5 110 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 TMEM222Q9H0R3 208 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 THYN1Q9P016 225 aa12.14□□□□□ -0.47
CPSF1-212ENST00000616140 GREB1LQ9C091 1923 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-212ENST00000616140 OR2A4O95047 310 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 CSN3P07498 182 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 MRPL54Q6P161 138 aaKnown RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 TGIF2LYQ8IUE0 185 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 OR2A7Q96R45 310 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 PARP14Q460N5 1801 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 B4E171 279 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 CCKARP32238 428 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 TSPAN7P41732 249 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 IGLV3-21P80748 117 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 SERF2P84101 59 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 UBE2V2Q15819 145 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 FDX2Q6P4F2 183 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 H1FOOQ8IZA3 346 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 RNF24Q9Y225 148 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 PITX3O75364 302 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 BCL2P10415 239 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 APOBEC4Q8WW27 367 aaKnown RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 GMPPAQ96IJ6 420 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 AICDAQ9GZX7 198 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 HEATR5BQ9P2D3 2071 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 TAF1LQ8IZX4 1826 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 IGHV3OR15-7A0A075B7D8 119 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 DHRS7CA6NNS2 312 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 TBX6O95947 436 aaPredicted RBP12.13□□□□□ -0.47
CPSF1-212ENST00000616140 NHLH1Q02575 133 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 NHLRC3Q5JS37 347 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 ZNF665Q9H7R5 613 aa12.13□□□□□ -0.47
CPSF1-212ENST00000616140 HIST3H3Q16695 136 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 RND1Q92730 232 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 OR5AL1P0C617 328 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 LINC00596Q86U02 117 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 ABHD14BQ96IU4 210 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 SMDT1Q9H4I9 107 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 PRNDQ9UKY0 176 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 IGHV1-45A0A0A0MS14 117 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 A0A1W2PQM1 296 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 MFSD2BA6NFX1 497 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 BMPR1BO00238 502 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 CLDN14O95500 239 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms