RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ARG2P78540 354 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 FOXO1Q12778 655 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 ZNF506Q5JVG8 444 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 MRGPRGQ86SM5 289 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 SERTAD4Q9NUC0 356 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 FER1L5A0AVI2 2057 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 UCP3P55916 312 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 RTP5Q14D33 572 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 TUSC5Q8IXB3 177 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 OR2T10Q8NGZ9 312 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 CLDND2Q8NHS1 167 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 FGFBP3Q8TAT2 258 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 TMEM54Q969K7 222 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 PLA2G3Q9NZ20 509 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 TINAGQ9UJW2 476 aa10.82□□□□□ -0.68
LIG1-221ENST00000613670 EGR1P18146 543 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 EPHA8P29322 1005 aaPredicted RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 FAM3BP58499 235 aaPredicted RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 CDPF1Q6NVV7 123 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 OR4D5Q8NGN0 318 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 M1APQ8TC57 530 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 IL22RA2Q969J5 263 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 TECTBQ96PL2 329 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 OR1A1Q9P1Q5 309 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 CLN8Q9UBY8 286 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 FOXD3Q9UJU5 478 aaPredicted RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 IGHV3-43A0A0B4J1X8 118 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 DVL1O14640 695 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 SYNGR3O43761 229 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 ZIC3O60481 467 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 IGHV3-43DP0DP04 118 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 SLC25A6P12236 298 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 TMEM164Q5U3C3 297 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 BTNL3Q6UXE8 466 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 SPEM1Q8N4L4 309 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 NANOS1Q8WY41 292 aaKnown RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 RCC1LQ96I51 464 aaKnown RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 SF3B5Q9BWJ5 86 aaKnown RBP10.81□□□□□ -0.68
LIG1-221ENST00000613670 MSL2Q9HCI7 577 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 SIT1Q9Y3P8 196 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 CDH23Q9H251 3354 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 LOC102723971A0A1B0GUV8 181 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 C17orf112F2Z3M2 114 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 KITLGP21583 273 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 HTD2P86397 168 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 COL19A1Q14993 1142 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 IGFBP7Q16270 282 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 CNEP1R1Q8N9A8 125 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 TMEM204Q9BSN7 226 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 VSIRQ9H7M9 311 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 TRAPPC1Q9Y5R8 145 aa10.81□□□□□ -0.68
LIG1-221ENST00000613670 DOCK10Q96BY6 2186 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 SPINK4O60575 86 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 RFPL3SP0C7P2 107 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 G6PCP35575 357 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 PTGDSP41222 190 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 RPL19P84098 196 aaKnown RBP10.8□□□□□ -0.68
LIG1-221ENST00000613670 NABP1Q96AH0 204 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 ANAPC10Q9UM13 185 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 ATP23Q9Y6H3 246 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 A0A1B0GU03 582 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 TCAPO15273 167 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 IGLV3-19P01714 112 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 OR3A1P47881 315 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 FGF12P61328 243 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 HGFACQ04756 655 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 SLC25A53Q5H9E4 307 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 DCAF12Q5T6F0 453 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 OR2D2Q9H210 308 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 ZDHHC11Q9H8X9 412 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 TP53TG5Q9Y2B4 290 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 TIMM8BQ9Y5J9 83 aaPredicted RBP10.8□□□□□ -0.68
LIG1-221ENST00000613670 hCG_38984A0A1B0GV85 526 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 LRP5LA4QPB2 252 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 H0Y980 276 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 IGHV2-5P01817 119 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 CTSSP25774 331 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 ZNF90Q03938 601 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 PCOLCEQ15113 449 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 KDF1Q8NAX2 398 aaPredicted RBP10.8□□□□□ -0.68
LIG1-221ENST00000613670 DEFB127Q9H1M4 99 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 TMEM9BQ9NQ34 198 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 SPTBN2O15020 2390 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 THADAQ6YHU6 1953 aa10.8□□□□□ -0.68
LIG1-221ENST00000613670 PTPRZ1P23471 2315 aaPredicted RBP10.8□□□□□ -0.68
LIG1-221ENST00000613670 A0A0G2JMM0 328 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 A0A1W2PPB8 328 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 A0A1W2PRS3 328 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 KIR3DP1A8MWS1 328 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 HIST1H1BP16401 226 aaKnown RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 GPX4P36969 197 aaPredicted RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 STARD6P59095 220 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 ERVK-16P61578 105 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 MEF2BQ02080 365 aaPredicted RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 FAM103A1Q9BTL3 118 aaKnown RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 RTL8AQ9BWD3 113 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 PLEKHA3Q9HB20 300 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 RYDENQ9NUL5 291 aaKnown RBP10.79□□□□□ -0.68
LIG1-221ENST00000613670 CDIPTO14735 213 aa10.79□□□□□ -0.68
LIG1-221ENST00000613670 SH2D1BO14796 132 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms