RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 EHFQ9NZC4 300 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 MRM2Q9UI43 246 aaKnown RBP3.23□□□□□ -1.89
LINC00540-201ENST00000611481 LRP2P98164 4655 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 TMED7-TICAM2A0A0A6YYA0 188 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 IGLV1-36A0A0B4J1U3 117 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 TMEM72A0PK05 275 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 PSMB11A5LHX3 300 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 C12orf77C9JDV5 145 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 M0R2N4 97 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 XRCC2O43543 280 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 PRKYO43930 277 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SOX15O60248 233 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SDC1P18827 310 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 FKBP2P26885 142 aaKnown RBP3.22□□□□□ -1.89
LINC00540-201ENST00000611481 HTR2CP28335 458 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 DDOSTP39656 456 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 P2RY4P51582 365 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 PRKXP51817 358 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ERVK-16P61578 105 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ST3GAL3Q11203 375 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SKP2Q13309 424 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OR5I1Q13606 314 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CYLC2Q14093 348 aaPredicted RBP3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OR4D1Q15615 310 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CYP51A1Q16850 503 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 KCTD19Q17RG1 926 aaPredicted RBP3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ECSCRQ19T08 205 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 RGS21Q2M5E4 152 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 UTF1Q5T230 341 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ZC2HC1BQ5TFG8 222 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 Q5VSD8 79 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ARL9Q6T311 187 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 NFE4Q86UQ8 179 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF429Q86V71 674 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 LYPD6Q86Y78 171 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SKA3Q8IX90 412 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CMTM1Q8IZ96 169 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SAMD12Q8N8I0 201 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CDRT4Q8N9R6 151 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OR10V1Q8NGI7 309 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OR6N2Q8NGY6 317 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OR4Q3Q8NH05 313 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 FNDC8Q8TC99 324 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 LGALS14Q8TCE9 139 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CAPSLQ8WWF8 208 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 NAT9Q9BTE0 207 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 TMED9Q9BVK6 235 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 OSBPL10Q9BXB5 764 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ULBP2Q9BZM5 246 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SYT4Q9H2B2 425 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 C1orf198Q9H425 327 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 SAV1Q9H4B6 383 aaPredicted RBP3.22□□□□□ -1.89
LINC00540-201ENST00000611481 ABCB10Q9NRK6 738 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 CLEC5AQ9NY25 188 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 PAK5Q9P286 719 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 FAF1Q9UNN5 650 aaPredicted RBP3.22□□□□□ -1.89
LINC00540-201ENST00000611481 KCNIP3Q9Y2W7 256 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 RNF11Q9Y3C5 154 aa3.22□□□□□ -1.89
LINC00540-201ENST00000611481 A0A0A6YYH2 397 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TMEM213A2RRL7 107 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 A6NJ64 397 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 NPIPB9F8W1W9 429 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 GOSR2O14653 212 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 SULT1B1O43704 296 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 PCDH7O60245 1069 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 VAMP5O95183 116 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 FSTL3O95633 263 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 C2P06681 752 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 FCGR3AP08637 254 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 KRT16P08779 473 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CTRB1P17538 263 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 APLNRP35414 380 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TFPI2P48307 235 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 UBE2G2P60604 165 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 UBE2MP61081 183 aaKnown RBP3.21□□□□□ -1.9
LINC00540-201ENST00000611481 PPP1CBP62140 327 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 PSG7Q13046 419 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 RPEL1Q2QD12 228 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 KRTAP13-3Q3SY46 172 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 C5orf47Q569G3 176 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CDKL4Q5MAI5 379 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 LINC00242Q5T6M2 205 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 ZNF691Q5VV52 312 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CTRB2Q6GPI1 263 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 EMBQ6PCB8 327 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 ACP7Q6ZNF0 438 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CMC1Q7Z7K0 106 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OSR2Q8N2R0 312 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 NECAP1Q8NC96 275 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR2T33Q8NG76 320 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR10AD1Q8NGE0 317 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR5AP2Q8NGF4 316 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR1S2Q8NGQ3 325 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR2T11Q8NH01 316 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR8U1Q8NH10 309 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 TRUB1Q8WWH5 349 aaKnown RBP3.21□□□□□ -1.9
LINC00540-201ENST00000611481 CDS1Q92903 461 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 SEC22AQ96IW7 307 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OXGR1Q96P68 337 aa3.21□□□□□ -1.9
LINC00540-201ENST00000611481 OR2M2Q96R28 347 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms