RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HFEQ30201 348 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 MBNL3Q9NUK0 354 aaKnown RBP8.53□□□□□ -1.04
VPS53-220ENST00000576149 GAB2Q9UQC2 676 aa8.53□□□□□ -1.04
VPS53-220ENST00000576149 A0A0G2JRQ6 117 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 SPAARA0A1B0GVQ0 90 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 TMEM210A6NLX4 147 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 K7N7A8 449 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 AQP7O14520 342 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 SH2D1BO14796 132 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 GALR2O43603 387 aaPredicted RBP8.52□□□□□ -1.05
VPS53-220ENST00000576149 CHST1O43916 411 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 NXPH2O95156 264 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 SERPINE2P07093 398 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 PSG2P11465 335 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 CBR1P16152 277 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 WT1P19544 449 aaPredicted RBP8.52□□□□□ -1.05
VPS53-220ENST00000576149 COX5AP20674 150 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 OMGP23515 440 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 KIR2DL2P43627 348 aaPredicted RBP8.52□□□□□ -1.05
VPS53-220ENST00000576149 BAXQ07812 192 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 GUK1Q16774 197 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 TMEM182Q6ZP80 229 aaPredicted RBP8.52□□□□□ -1.05
VPS53-220ENST00000576149 OR51H1Q8NH63 302 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 KLF14Q8TD94 323 aaPredicted RBP8.52□□□□□ -1.05
VPS53-220ENST00000576149 GPR146Q96CH1 333 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 AKR1E2Q96JD6 320 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 PARD6AQ9NPB6 346 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 TRAPPC2LQ9UL33 140 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 WIPI2Q9Y4P8 454 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 ESPL1Q14674 2120 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 TRAV17A0A0B4J275 112 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 A0A1B0GU03 582 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 H0YL77 283 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 H7C2Y5 167 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 IGKV3-15P01624 115 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 NFYBP25208 207 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 ATP6V0CP27449 155 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 MPV17P39210 176 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 PAX9P55771 341 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 PEA15Q15121 130 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 OR8G1Q15617 311 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 HMGN3Q15651 99 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 CNEP1R1Q8N9A8 125 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 WDR31Q8NA23 367 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 OR5C1Q8NGR4 320 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 TXN2Q99757 166 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 KPTNQ9Y664 436 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 FAM186AA6NE01 2351 aa8.52□□□□□ -1.05
VPS53-220ENST00000576149 IGHV3-64DA0A0J9YX35 117 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 PCP4L1A6NKN8 68 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 KIAA1324LA8MWY0 1029 aaPredicted RBP8.51□□□□□ -1.05
VPS53-220ENST00000576149 WRBO00258 174 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 CST7O76096 145 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 GRPP07492 148 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 PPT1P50897 306 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 DYNLT3P51808 116 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 FLI1Q01543 452 aaPredicted RBP8.51□□□□□ -1.05
VPS53-220ENST00000576149 VWA1Q6PCB0 445 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 STX12Q86Y82 276 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 C9orf106Q8NAJ2 232 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 C1orf162Q8NEQ5 155 aaPredicted RBP8.51□□□□□ -1.05
VPS53-220ENST00000576149 OR2G3Q8NGZ4 309 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 LSM10Q969L4 123 aaKnown RBP8.51□□□□□ -1.05
VPS53-220ENST00000576149 HES4Q9HCC6 221 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 C1QTNF9BB2RNN3 333 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 UMAD1C9J7I0 102 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 HSPA12AO43301 675 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 AGFG2O95081 481 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 NXPH3O95157 252 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 IGKV1-39P01597 117 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 IGKV1D-39P04432 117 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 OR8G5Q8NG78 346 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 FAM213BQ8TBF2 198 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 SARAFQ96BY9 339 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 EIF5A2Q9GZV4 153 aaKnown RBP8.51□□□□□ -1.05
VPS53-220ENST00000576149 OBP2BQ9NPH6 170 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 TINAGQ9UJW2 476 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 RFNGQ9Y644 331 aa8.51□□□□□ -1.05
VPS53-220ENST00000576149 PRR33A8MZF0 331 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 MLNRO43193 412 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 HAND1O96004 215 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 EPHA1P21709 976 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 CEACAM6P40199 344 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 Q6ZRM9 215 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 C11orf53Q8IXP5 236 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 ZNF295-AS1Q8N0V1 137 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 TMEM217Q8N7C4 229 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 LFNGQ8NES3 379 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 PPP1R3CQ9UQK1 317 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 A0A1B0GW64 132 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 MED19A0JLT2 244 aaPredicted RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 PSPNO60542 156 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 SCAF4O95104 1147 aaKnown RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 PPP1CCP36873 323 aaKnown RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 ZNF585BQ52M93 769 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 OR10Z1Q8NGY1 313 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 UBALD1Q8TB05 177 aa8.5□□□□□ -1.05
VPS53-220ENST00000576149 GNPNAT1Q96EK6 184 aaPredicted RBP8.5□□□□□ -1.05
VPS53-220ENST00000576149 RAB40CQ96S21 281 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms