RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 HTR1DP28221 377 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 CAV2P51636 162 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 DIO3P55073 304 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 DLX6P56179 175 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 SARNPP82979 210 aaKnown RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 LOXL1Q08397 574 aaPredicted RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 RGNQ15493 299 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 DNAL1Q4LDG9 190 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 ACTBL2Q562R1 376 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 RIBC1Q8N443 379 aaPredicted RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 CCDC54Q8NEL0 328 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 OR4S2Q8NH73 311 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 BLOC1S5Q8TDH9 187 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 SLC37A2Q8TED4 501 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 UCN3Q969E3 161 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 HAUS1Q96CS2 278 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 APOL4Q9BPW4 351 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 SULT4A1Q9BR01 284 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 ZNF702PQ9H963 129 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 EXOSC4Q9NPD3 245 aaKnown RBP4.21□□□□□ -1.74
VPS53-219ENST00000576019 MED4Q9NPJ6 270 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 BABAM2Q9NXR7 383 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 UVRAGQ9P2Y5 699 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 SLC7A11Q9UPY5 501 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 MOB4Q9Y3A3 225 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 ORC6Q9Y5N6 252 aa4.21□□□□□ -1.74
VPS53-219ENST00000576019 EML6Q6ZMW3 1958 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 IGHV3OR16-9A0A0B4J2B5 98 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 A0A0G2JN53 185 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 IFITM10A6NMD0 228 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 CENPBD1B2RD01 187 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 RP2O75695 350 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 GLSO94925 669 aaPredicted RBP4.2□□□□□ -1.74
VPS53-219ENST00000576019 CD3GP09693 182 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 P2RX1P51575 399 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 MTPNP58546 118 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 B2MP61769 119 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 MRPS25P82663 173 aaKnown RBP4.2□□□□□ -1.74
VPS53-219ENST00000576019 TBC1D28Q2M2D7 210 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 COA6Q5JTJ3 125 aaKnown RBP4.2□□□□□ -1.74
VPS53-219ENST00000576019 TTC33Q6PID6 262 aaPredicted RBP4.2□□□□□ -1.74
VPS53-219ENST00000576019 STPG2Q8N412 459 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 C19orf18Q8NEA5 215 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 OR6N1Q8NGY5 312 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 C7orf33Q8WU49 177 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 PTH2Q96A98 100 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 GALNT14Q96FL9 552 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 PGLYRP3Q96LB9 341 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 ZNF599Q96NL3 588 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 UGT2B28Q9BY64 529 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 OR11A1Q9GZK7 315 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 HRASLSQ9HDD0 168 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 CD84Q9UIB8 345 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 DNAH10Q8IVF4 4471 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 HEATR5AQ86XA9 2040 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 CCDC88CQ9P219 2028 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 ANKRD36A6QL64 1941 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 PRR14LQ5THK1 2151 aa4.2□□□□□ -1.74
VPS53-219ENST00000576019 BIRC5O15392 142 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 MAGEB4O15481 346 aaPredicted RBP4.19□□□□□ -1.74
VPS53-219ENST00000576019 MOSP00540 346 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 RLN2P04090 185 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 CD74P04233 296 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 CDKN2BP42772 138 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 RBMY1FQ15415 496 aaKnown RBP4.19□□□□□ -1.74
VPS53-219ENST00000576019 CDNFQ49AH0 187 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 METTL21CQ5VZV1 264 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 LPCAT4Q643R3 524 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 STEAP4Q687X5 459 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 FBXW12Q6X9E4 464 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 TMEM179BQ7Z7N9 219 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 COX18Q8N8Q8 333 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 NEIL3Q8TAT5 605 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 MUC7Q8TAX7 377 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 FAM45AQ8TCE6 357 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 DCUN1D4Q92564 292 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 PPWD1Q96BP3 646 aaKnown RBP4.19□□□□□ -1.74
VPS53-219ENST00000576019 S100PBPQ96BU1 408 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 DDIT4LQ96D03 193 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 SMARCD1Q96GM5 515 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 CCDC42Q96M95 316 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 KCTD7Q96MP8 289 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 DUX3Q96PT4 197 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 RBP7Q96R05 134 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 TEAD3Q99594 435 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 CDCA4Q9BXL8 241 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 ARL6Q9H0F7 186 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 C12orf4Q9NQ89 552 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 DNAJC27Q9NZQ0 273 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 KMT2AQ03164 3969 aa4.19□□□□□ -1.74
VPS53-219ENST00000576019 ANKRD12Q6UB98 2062 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 HMCN2Q8NDA2 5059 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 A0A0J9YXV3 536 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TINCRA0A1B0GVN0 87 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 TMEM114B3SHH9 223 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 H0Y9J4 135 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 H7C423 109 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 UBDO15205 165 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 PFDN6O15212 129 aa4.18□□□□□ -1.74
VPS53-219ENST00000576019 ZNF354AO60765 605 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms