RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SURF2Q15527 256 aaPredicted RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 NRF1Q16656 503 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 ACOT6Q3I5F7 207 aaPredicted RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 TMEM128Q5BJH2 165 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 FAM183BPQ6ZVS7 135 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 HIST2H3AQ71DI3 136 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 CHMP1BQ7LBR1 199 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SLC16A13Q7RTY0 426 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 NEGR1Q7Z3B1 354 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 OAFQ86UD1 273 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 ANGPTL5Q86XS5 388 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 ZNF567Q8N184 647 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 CBR4Q8N4T8 237 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 COX18Q8N8Q8 333 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 BLNKQ8WV28 456 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 C11orf52Q96A22 123 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SEH1LQ96EE3 360 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MRPL48Q96GC5 212 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 PGLYRP4Q96LB8 373 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 LINC00477Q96M19 166 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 BIRC8Q96P09 236 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 PPP1R2P1Q96PQ5 205 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RTBDNQ9BSG5 229 aaPredicted RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 MARVELD1Q9BSK0 173 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RNF126Q9BV68 326 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 EMC6Q9BV81 110 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MS4A8Q9BY19 250 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MROQ9BYG7 248 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 OR51E2Q9H255 320 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 LRTM1Q9HBL6 345 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RGS18Q9NS28 235 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 DEPPQ9NTK1 212 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RASL12Q9NYN1 266 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 DNAJC27Q9NZQ0 273 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 POLR1DQ9Y2S0 133 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 HEY1Q9Y5J3 304 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MYH11P35749 1972 aa2.59□□□□□ -2
NUP88-209ENST00000574855 ADAMTSL1Q8N6G6 1762 aa2.59□□□□□ -2
NUP88-209ENST00000574855 PSME4Q14997 1843 aa2.58□□□□□ -2
NUP88-209ENST00000574855 LRRK1Q38SD2 2015 aa2.58□□□□□ -2
NUP88-209ENST00000574855 COL4A5P29400 1685 aa2.58□□□□□ -2
NUP88-209ENST00000574855 IGHV3OR16-10A0A075B7F0 116 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CCL15-CCL14A0A0B4J2E2 113 aa2.58□□□□□ -2
NUP88-209ENST00000574855 RBFOX3A6NFN3 312 aa2.58□□□□□ -2
NUP88-209ENST00000574855 EPM2AB3EWF7 344 aa2.58□□□□□ -2
NUP88-209ENST00000574855 G3V2L1 256 aa2.58□□□□□ -2
NUP88-209ENST00000574855 DLEU1O43261 78 aa2.58□□□□□ -2
NUP88-209ENST00000574855 ORC5O43913 435 aa2.58□□□□□ -2
NUP88-209ENST00000574855 MOSP00540 346 aa2.58□□□□□ -2
NUP88-209ENST00000574855 RENP00797 406 aa2.58□□□□□ -2
NUP88-209ENST00000574855 MRPL3P09001 348 aaKnown RBP2.58□□□□□ -2
NUP88-209ENST00000574855 GKN3PP0CG01 181 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CXCL8P10145 99 aa2.58□□□□□ -2
NUP88-209ENST00000574855 COX4I1P13073 169 aa2.58□□□□□ -2
NUP88-209ENST00000574855 IFI30P13284 250 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CXCL3P19876 107 aa2.58□□□□□ -2
NUP88-209ENST00000574855 GABRR1P24046 479 aa2.58□□□□□ -2
NUP88-209ENST00000574855 AK4P27144 223 aaPredicted RBP2.58□□□□□ -2
NUP88-209ENST00000574855 MIPP30301 263 aa2.58□□□□□ -2
NUP88-209ENST00000574855 KIR2DS2P43631 304 aa2.58□□□□□ -2
NUP88-209ENST00000574855 RAP1BP61224 184 aa2.58□□□□□ -2
NUP88-209ENST00000574855 RHOBP62745 196 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CACNG7P62955 275 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CD47Q08722 323 aa2.58□□□□□ -2
NUP88-209ENST00000574855 INCA1Q0VD86 236 aa2.58□□□□□ -2
NUP88-209ENST00000574855 IHHQ14623 411 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CCL15Q16663 113 aa2.58□□□□□ -2
NUP88-209ENST00000574855 ZNF630Q2M218 657 aaPredicted RBP2.58□□□□□ -2
NUP88-209ENST00000574855 CDNFQ49AH0 187 aa2.58□□□□□ -2
NUP88-209ENST00000574855 TNFAIP8L3Q5GJ75 292 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CLEC12AQ5QGZ9 265 aa2.58□□□□□ -2
NUP88-209ENST00000574855 TMEM78Q5T7P6 136 aa2.58□□□□□ -2
NUP88-209ENST00000574855 LAMTOR1Q6IAA8 161 aa2.58□□□□□ -2
NUP88-209ENST00000574855 UFSP1Q6NVU6 142 aa2.58□□□□□ -2
NUP88-209ENST00000574855 OPN5Q6U736 354 aa2.58□□□□□ -2
NUP88-209ENST00000574855 IGFL2Q6UWQ7 119 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CARM1Q86X55 608 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CALHM3Q86XJ0 350 aa2.58□□□□□ -2
NUP88-209ENST00000574855 C1orf158Q8N1D5 194 aa2.58□□□□□ -2
NUP88-209ENST00000574855 C6orf223Q8N319 242 aa2.58□□□□□ -2
NUP88-209ENST00000574855 Q8N377 158 aa2.58□□□□□ -2
NUP88-209ENST00000574855 NPWQ8N729 165 aa2.58□□□□□ -2
NUP88-209ENST00000574855 OR4P4Q8NGL7 312 aa2.58□□□□□ -2
NUP88-209ENST00000574855 NEIL3Q8TAT5 605 aa2.58□□□□□ -2
NUP88-209ENST00000574855 SKA2Q8WVK7 121 aaPredicted RBP2.58□□□□□ -2
NUP88-209ENST00000574855 CYGBQ8WWM9 190 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CHCHD10Q8WYQ3 142 aaPredicted RBP2.58□□□□□ -2
NUP88-209ENST00000574855 NABP1Q96AH0 204 aa2.58□□□□□ -2
NUP88-209ENST00000574855 L3HYPDHQ96EM0 354 aa2.58□□□□□ -2
NUP88-209ENST00000574855 DIRAS2Q96HU8 199 aa2.58□□□□□ -2
NUP88-209ENST00000574855 PYURFQ96I23 114 aa2.58□□□□□ -2
NUP88-209ENST00000574855 C9orf85Q96MD7 179 aa2.58□□□□□ -2
NUP88-209ENST00000574855 RDH12Q96NR8 316 aa2.58□□□□□ -2
NUP88-209ENST00000574855 PITX2Q99697 317 aa2.58□□□□□ -2
NUP88-209ENST00000574855 SOSTQ9BQB4 213 aa2.58□□□□□ -2
NUP88-209ENST00000574855 SRXN1Q9BYN0 137 aa2.58□□□□□ -2
NUP88-209ENST00000574855 CCDC90BQ9GZT6 254 aa2.58□□□□□ -2
NUP88-209ENST00000574855 TMEM100Q9NV29 134 aa2.58□□□□□ -2
NUP88-209ENST00000574855 ZNF223Q9UK11 482 aaPredicted RBP2.58□□□□□ -2
NUP88-209ENST00000574855 NEU3Q9UQ49 428 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms