RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 MPDU1O75352 247 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 MPC1LP0DKB6 136 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TDGF1P13385 188 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 ZNF30P17039 623 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TMBIM6P55061 237 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TCL1AP56279 114 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 RAB8AP61006 207 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 COPZ1P61923 177 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 RHOBP62745 196 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 RPL31P62899 125 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 PPP3R1P63098 170 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CDK5Q00535 292 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CAV1Q03135 178 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CD164Q04900 197 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 GINS1Q14691 196 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 C4orf26Q17RF5 130 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 OCIAD2Q56VL3 154 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CST9Q5W186 159 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 STEAP4Q687X5 459 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 WDR59Q6PJI9 974 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TMPPEQ6ZT21 453 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 ZNF547Q8IVP9 402 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CA13Q8N1Q1 262 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 ZADH2Q8N4Q0 377 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 C12orf45Q8N5I9 185 aaPredicted RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 OR52E4Q8NGH9 312 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 OR13G1Q8NGZ3 307 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 OR5K2Q8NHB8 316 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 SPPL2BQ8TCT7 592 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 APOBEC3DQ96AK3 386 aaPredicted RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 GALMQ96C23 342 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CCDC126Q96EE4 140 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 DNAJC30Q96LL9 226 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 RBP7Q96R05 134 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 OR7D2Q96RA2 312 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TBX5Q99593 518 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 KLF6Q99612 283 aaPredicted RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 C20orf144Q9BQM9 153 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 MRPL45Q9BRJ2 306 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 GINS3Q9BRX5 216 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 FAIM2Q9BWQ8 316 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 REEP4Q9H6H4 257 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 FGF20Q9NP95 211 aaPredicted RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 ACP6Q9NPH0 428 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CCL28Q9NRJ3 127 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 CLCF1Q9UBD9 225 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 METTL1Q9UBP6 276 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 NUFIP1Q9UHK0 495 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 SCP2D1Q9UJQ7 156 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 SSR3Q9UNL2 185 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 BAIAP2Q9UQB8 552 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 C14orf166Q9Y224 244 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 ATP10BO94823 1461 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 IQGAP1P46940 1657 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 MYH7BA7E2Y1 1941 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 KNDC1Q76NI1 1749 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 URB2Q14146 1524 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 ARAP3Q8WWN8 1544 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 DUOX2Q9NRD8 1548 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 GPATCH8Q9UKJ3 1502 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 IGSF9BQ9UPX0 1349 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 INO80Q9ULG1 1556 aaPredicted RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 CNTNAP1P78357 1384 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 ERVK-7P63135 1459 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 LRRIQ1Q96JM4 1722 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 IFT172Q9UG01 1749 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 EXOC1LA0A1B0GW35 172 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 TSPAN11A1L157 253 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 C20orf202A1L168 122 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 KRBOX1C9JBD0 128 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 M0R143 59 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 DNASE2O00115 360 aaPredicted RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 MANBAO00462 879 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 PLPP1O14494 284 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 CRXO43186 299 aaPredicted RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 RDH16O75452 317 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 STK16O75716 305 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 CATP04040 527 aaKnown RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 TRAPPC2P0DI81 140 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 TRAPPC2BP0DI82 140 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 IGFBP3P17936 291 aaPredicted RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 IL1RNP18510 177 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 PVALBP20472 110 aaPredicted RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 RPL12P30050 165 aaKnown RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 CRISP3P54108 245 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 TAS2R43P59537 309 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 PFN3P60673 137 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 PAFAH1B2P68402 229 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 MRPS10P82664 201 aaKnown RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 PSG4Q00888 419 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 BTN1A1Q13410 526 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 GUSBP1Q15486 140 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 ZNF181Q2M3W8 571 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 TRMT12Q53H54 448 aaKnown RBP2.86□□□□□ -1.95
NUP88-208ENST00000574087 DMRTC1Q5HYR2 192 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 TEX261Q6UWH6 196 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 C6orf120Q7Z4R8 191 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 DEFB128Q7Z7B8 93 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 COMMD7Q86VX2 200 aa2.86□□□□□ -1.95
NUP88-208ENST00000574087 BAP18Q8IXM2 172 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms