RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 PIMREGQ9BSJ6 248 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 RSRP1Q9BUV0 290 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 GHITMQ9H3K2 345 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 C5orf66Q9H5L9 145 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 OR2S2Q9NQN1 319 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 IDI2-AS1Q9NZ38 188 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 JPT1Q9UK76 154 aa11.3□□□□□ -0.6
CCDC40-209ENST00000573474 SNRPGP15A8MWD9 76 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 RGS11O94810 467 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 OR4E1P0C645 316 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 AKR1C4P17516 323 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 GNB2P62879 340 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 ZNF273Q14593 569 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 GNMTQ14749 295 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 C4orf46Q504U0 113 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 ADAD2Q8NCV1 583 aaKnown RBP11.29□□□□□ -0.6
CCDC40-209ENST00000573474 OR10V1Q8NGI7 309 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 OR52M1Q8NGK5 317 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 C8orf46Q8TAG6 207 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 C10orf105Q8TEF2 133 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 PERPQ96FX8 193 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 ZNF486Q96H40 463 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-209ENST00000573474 ZNF714Q96N38 554 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 SEC22CQ9BRL7 303 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 BPESC1Q9GZL8 116 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 SLC5A7Q9GZV3 580 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 OR51J1Q9H342 316 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 NARFLQ9H6Q4 476 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 BEX4Q9NWD9 120 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-209ENST00000573474 GNG12Q9UBI6 72 aa11.29□□□□□ -0.6
CCDC40-209ENST00000573474 AKAP6Q13023 2319 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 IGHV3-43A0A0B4J1X8 118 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 IGKV1D-13A0A0B4J2D9 117 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 A0A1W2PPH5 198 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 YPEL1O60688 119 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 IGHV2-5P01817 119 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 IGHV3-43DP0DP04 118 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 IGKV1-13P0DP09 117 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 PI3P19957 117 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 DNASE1P24855 282 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 GNRHRP30968 328 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 PPP1CCP36873 323 aaKnown RBP11.28□□□□□ -0.6
CCDC40-209ENST00000573474 LOXL3P58215 753 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 DHODHQ02127 395 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 CBX3Q13185 183 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 LTC4SQ16873 150 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 ABCA11PQ4W5N1 156 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 ESCO2Q56NI9 601 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 TMEM128Q5BJH2 165 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 CD276Q5ZPR3 534 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 FAM216AQ8WUB2 273 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 SECTM1Q8WVN6 248 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 CAPSLQ8WWF8 208 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 YPEL2Q96QA6 119 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 SSBP3Q9BWW4 388 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-209ENST00000573474 GFOD1Q9NXC2 390 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 RPUSD1Q9UJJ7 312 aaKnown RBP11.28□□□□□ -0.6
CCDC40-209ENST00000573474 ZNF221Q9UK13 617 aa11.28□□□□□ -0.6
CCDC40-209ENST00000573474 RBM7Q9Y580 266 aaKnown RBP11.28□□□□□ -0.6
CCDC40-209ENST00000573474 LOC105371242A0A075B767 164 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 PPIAL4CA0A0B4J2A2 164 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 HMX3A6NHT5 357 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 VWC2LB2RUY7 222 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 GPR31O00270 319 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 CREBL2O60519 120 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-209ENST00000573474 PPIAL4GP0DN37 164 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 CCL3L1P16619 93 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 OMGP23515 440 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 DLX6P56179 175 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 MORN2Q502X0 79 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 LY6G6FQ5SQ64 297 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 PRAMEF5Q5TYX0 476 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 ZNF626Q68DY1 528 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 C11orf88Q6PI97 169 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 HEPN1Q6WQI6 88 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 CCDC71LQ8N9Z2 235 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 LY6G5BQ8NDX9 201 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 CLDND2Q8NHS1 167 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 ZNF431Q8TF32 576 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-209ENST00000573474 CHAC2Q8WUX2 184 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 EDARADDQ8WWZ3 215 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 TMEM230Q96A57 120 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 RAB39BQ96DA2 213 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 PARP12Q9H0J9 701 aaKnown RBP11.27□□□□□ -0.61
CCDC40-209ENST00000573474 KIAA2026Q5HYC2 2103 aa11.27□□□□□ -0.61
CCDC40-209ENST00000573474 C9orf170A2RU37 121 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 ITGB1BP1O14713 200 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 HSD17B6O14756 317 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 PHF1O43189 567 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-209ENST00000573474 SLC22A5O76082 557 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 OR8U9P0C7N5 309 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 NFYBP25208 207 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 S100GP29377 79 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 PIGPP57054 158 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 RND3P61587 244 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 LMO4P61968 165 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 DHRS2Q13268 280 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 PPP1R1AQ13522 171 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 MSMO1Q15800 293 aa11.26□□□□□ -0.61
CCDC40-209ENST00000573474 HIST2H2BCQ6DN03 193 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms