RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 A0A1B0GX30 115 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A10PA6NDY2 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A18PA6NE21 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A16PA6NEW6 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A20PA6NIJ5 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A8PA6NJQ4 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A7PA6NKC0 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A22PA8MWA6 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A12PA8MX19 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A5PA8MXJ8 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A23PA8MXZ1 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A15PP0C7V4 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A13PP0C7W8 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A14PP0C7W9 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 FAM90A24PP0C7X0 464 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 CRISP2P16562 243 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 GABRA6Q16445 453 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 C16orf82Q7Z2V1 217 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 RPEQ96AT9 228 aa13.29□□□□□ -0.28
CIITA-204ENST00000570546 UNC119Q13432 240 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 C2orf68Q2NKX9 166 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 CXorf66Q5JRM2 361 aaPredicted RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 FA2HQ7L5A8 372 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 SELENOHQ8IZQ5 122 aaKnown RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 OR4F17Q8NGA8 305 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 SERF2P84101 59 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 SSX7Q7RTT5 188 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 RSG1Q9BU20 258 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 AAMDCQ9H7C9 122 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 PITPNC1Q9UKF7 332 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 MPTX1A8MV57 137 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 J3QRE1 110 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 RPL29P47914 159 aaKnown RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 MNX1P50219 401 aaPredicted RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 FAM122AQ96E09 287 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 DHRS7CA6NNS2 312 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 LYPD3O95274 346 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 ID4P47928 161 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 OR1L6Q8NGR2 347 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 ABHD14BQ96IU4 210 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 CDX2Q99626 313 aaPredicted RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 SRXN1Q9BYN0 137 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 LYRM2Q9NU23 88 aaPredicted RBP13.28□□□□□ -0.28
CIITA-204ENST00000570546 TREM2Q9NZC2 230 aa13.28□□□□□ -0.28
CIITA-204ENST00000570546 PGLYRP1O75594 196 aaPredicted RBP13.27□□□□□ -0.28
CIITA-204ENST00000570546 CXorf1O96002 111 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 COL10A1Q03692 680 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 MSL2Q9HCI7 577 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 PIPOXQ9P0Z9 390 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 HOXD4P09016 255 aaPredicted RBP13.27□□□□□ -0.28
CIITA-204ENST00000570546 ORM2P19652 201 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 ZNF658BQ4V348 819 aaPredicted RBP13.27□□□□□ -0.28
CIITA-204ENST00000570546 TMEM54Q969K7 222 aa13.27□□□□□ -0.28
CIITA-204ENST00000570546 ZSWIM8A7E2V4 1837 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 A0A1W2PR77 199 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 NCBP2LA6PVI3 153 aaKnown RBP13.27□□□□□ -0.29
CIITA-204ENST00000570546 HOXA6P31267 233 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 SPNS3Q6ZMD2 512 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 IGHV3OR15-7A0A075B7D8 119 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 LOC102723971A0A1B0GUV8 181 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 TMPRSS2O15393 492 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 SYNGR1O43759 233 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 HSPB1P04792 205 aaKnown RBP13.27□□□□□ -0.29
CIITA-204ENST00000570546 GNB2P62879 340 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 TMEM187Q14656 261 aa13.27□□□□□ -0.29
CIITA-204ENST00000570546 ZNF646O15015 1829 aaPredicted RBP13.27□□□□□ -0.29
CIITA-204ENST00000570546 ASCC3Q8N3C0 2202 aaKnown RBP13.27□□□□□ -0.29
CIITA-204ENST00000570546 SRSF10O75494 262 aaKnown RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 MMP7P09237 267 aaPredicted RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 HFEQ30201 348 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 Q56UQ5 140 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 CHRNA10Q9GZZ6 450 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 SH3BGRL3Q9H299 93 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 RNF7Q9UBF6 113 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 ADAM11O75078 769 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 GAS1P54826 345 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 TCL1AP56279 114 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 B2MP61769 119 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 OR52L2PQ8NGH6 319 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 OR1B1Q8NGR6 318 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 VSTM2AQ8TAG5 236 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 TUBD1Q9UJT1 453 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 TRAV38-1A0A0B4J264 116 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 OR2H2O95918 312 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 CYB5R3P00387 301 aaPredicted RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 COX6A1P12074 109 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 KLK2P20151 261 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 TCTEX1D1Q8N7M0 179 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 PRNDQ9UKY0 176 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 HS3ST3B1Q9Y662 390 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 IGKV1D-43A0A0B4J1Z2 117 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 PRRX1P54821 245 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 DHRS7BQ6IAN0 325 aaPredicted RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 SEBOXQ9HB31 216 aaPredicted RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 YTHDF2Q9Y5A9 579 aaKnown RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 USF1P22415 310 aaPredicted RBP13.26□□□□□ -0.29
CIITA-204ENST00000570546 RARRES2Q99969 163 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 NPTNQ9Y639 398 aa13.26□□□□□ -0.29
CIITA-204ENST00000570546 IGKV3D-11A0A0A0MRZ8 115 aa13.25□□□□□ -0.29
CIITA-204ENST00000570546 K7ESF4 209 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms