RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RCC1LQ96I51 464 aaKnown RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 OR4C12Q96R67 309 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 GTF3C1Q12789 2109 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 ETV2O00321 342 aaPredicted RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 GATCO43716 136 aaKnown RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 NXPH2O95156 264 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 SCGB1D1O95968 90 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 CD55P08174 381 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 APLNRP35414 380 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 MDH2P40926 338 aaKnown RBP12.39□□□□□ -0.43
VPS35-210ENST00000568784 SLC38A11Q08AI6 406 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 CA5BP1Q8WTZ4 195 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 GPR87Q9BY21 358 aa12.39□□□□□ -0.43
VPS35-210ENST00000568784 LOC102723971A0A1B0GUV8 181 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 SRD5A2P31213 254 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 C16orf82Q7Z2V1 217 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 SLC35E3Q7Z769 313 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 SPEM1Q8N4L4 309 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 OR10V1Q8NGI7 309 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 DECR2Q9NUI1 292 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 OR2W1Q9Y3N9 320 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 PSMB3P49720 205 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 ID3Q02535 119 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 OR8B8Q15620 311 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 FIP1L1Q6UN15 594 aaKnown RBP12.38□□□□□ -0.43
VPS35-210ENST00000568784 C20orf204Q6ZNR8 217 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 Q6ZRM9 215 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 FAM58AQ8N1B3 248 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 ABHD5Q8WTS1 349 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 SIRT7Q9NRC8 400 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 FUT9Q9Y231 359 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 ZNF705FA8MVS1 300 aaPredicted RBP12.38□□□□□ -0.43
VPS35-210ENST00000568784 RHBDL1O75783 438 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 IGHV3-13P01766 116 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 IGHV3-7P01780 117 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 CTXN2P0C2S0 81 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 ZNF705DP0CH99 300 aaPredicted RBP12.38□□□□□ -0.43
VPS35-210ENST00000568784 ZNF705BP0CI00 300 aaPredicted RBP12.38□□□□□ -0.43
VPS35-210ENST00000568784 UCP1P25874 307 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 DDTP30046 118 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 CEACAM6P40199 344 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 FGF12P61328 243 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 HIST3H2BBQ8N257 126 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 RAB40CQ96S21 281 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 PCGF1Q9BSM1 259 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 HES7Q9BYE0 225 aa12.38□□□□□ -0.43
VPS35-210ENST00000568784 CRYAAP02489 173 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 IL2RGP31785 369 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 MRPL14Q6P1L8 145 aaKnown RBP12.37□□□□□ -0.43
VPS35-210ENST00000568784 OR10A7Q8NGE5 316 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 RFESDQ8TAC1 157 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TMEM56Q96MV1 263 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TAAR3PQ9P1P4 343 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 ATP23Q9Y6H3 246 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TMEM56-RWDD3S4R434 201 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 IGKV1-6A0A0C4DH72 117 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 GALR1P47211 349 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 PMS2P11Q13670 270 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TMEM241Q24JQ0 296 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 BSXQ3C1V8 233 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 BTNL3Q6UXE8 466 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 UNQ6494/PRO21346Q6UXR6 183 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 LURAP1LQ8IV03 231 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 KDF1Q8NAX2 398 aaPredicted RBP12.37□□□□□ -0.43
VPS35-210ENST00000568784 NINJ1Q92982 152 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 MALSU1Q96EH3 234 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 LURAP1Q96LR2 239 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TMEM204Q9BSN7 226 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 SF3B5Q9BWJ5 86 aaKnown RBP12.37□□□□□ -0.43
VPS35-210ENST00000568784 SMDT1Q9H4I9 107 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 CLN8Q9UBY8 286 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 PRSS50Q9UI38 385 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 TOX3O15405 576 aaPredicted RBP12.37□□□□□ -0.43
VPS35-210ENST00000568784 CELA3AP09093 270 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 OR2Y1Q8NGV0 311 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 SIGLEC12Q96PQ1 595 aa12.37□□□□□ -0.43
VPS35-210ENST00000568784 CHD3Q12873 2000 aaKnown RBP12.37□□□□□ -0.43
VPS35-210ENST00000568784 CYB5R3P00387 301 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 G0S2P27469 103 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 CEBPDP49716 269 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 ARL16Q0P5N6 197 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 H1FOOQ8IZA3 346 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 GATAD1Q8WUU5 269 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 UBE2ZQ9H832 354 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 DEFB108AA8MXU0 73 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 LILRA1O75019 489 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 FAM3BP58499 235 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 BATFQ16520 125 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 NMSQ5H8A3 153 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 APH1AQ96BI3 265 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 ELOVL1Q9BW60 279 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 PROK2Q9HC23 129 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 IGHV3-43A0A0B4J1X8 118 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 H0Y980 276 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 IGHV3-43DP0DP04 118 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 FGF7P21781 194 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 G6PCP35575 357 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 PMELP40967 661 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 HIST1H3AP68431 136 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 FOXO1Q12778 655 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms