RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ZNF782Q6ZMW2 699 aaPredicted RBP16.88■□□□□ 0.29
CLN3-212ENST00000564574 C5orf24Q7Z6I8 188 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 LYSMD2Q8IV50 215 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 TRIM63Q969Q1 353 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 TSC22D3Q99576 134 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 SDHCQ99643 169 aaPredicted RBP16.88■□□□□ 0.29
CLN3-212ENST00000564574 TOLLIPQ9H0E2 274 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 SIRT7Q9NRC8 400 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 NECAP2Q9NVZ3 263 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 GNG12Q9UBI6 72 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 ZNF469Q96JG9 3925 aaPredicted RBP16.88■□□□□ 0.29
CLN3-212ENST00000564574 MAP1AP78559 2803 aaPredicted RBP16.88■□□□□ 0.29
CLN3-212ENST00000564574 IGKV1-6A0A0C4DH72 117 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 ZNF736B4DX44 427 aaPredicted RBP16.87■□□□□ 0.29
CLN3-212ENST00000564574 YPEL1O60688 119 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 FCER2P06734 321 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 NFYBP25208 207 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 OR3A3P47888 321 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 AP3S2P59780 193 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 IGSF11Q5DX21 431 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 TRIQKQ629K1 86 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 OR52L2PQ8NGH6 319 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 OR5H2Q8NGV7 314 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 OR10J5Q8NHC4 309 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 DEDD2Q8WXF8 326 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 TNFRSF14Q92956 283 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 YPEL2Q96QA6 119 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 SUCNR1Q9BXA5 334 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 SLC23A1Q9UHI7 598 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 HIVEP1P15822 2718 aa16.87■□□□□ 0.29
CLN3-212ENST00000564574 IGHV3-43A0A0B4J1X8 118 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 ANKRD20A5PA0PJZ0 165 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 BET1O15155 118 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 HSPA12AO43301 675 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 LANCL1O43813 399 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 CD74P04233 296 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 IGHV3-43DP0DP04 118 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 HOXB4P17483 251 aaPredicted RBP16.86■□□□□ 0.29
CLN3-212ENST00000564574 HLA-DMAP28067 261 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 C8orf31Q8N9H6 132 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 GINS4Q9BRT9 223 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 CLEC7AQ9BXN2 247 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 TMEM160Q9NX00 188 aa16.86■□□□□ 0.29
CLN3-212ENST00000564574 IGHV2-26A0A0B4J1V2 119 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 A8MV72 311 aaPredicted RBP16.85■□□□□ 0.29
CLN3-212ENST00000564574 HRH1P35367 487 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 INPP1P49441 399 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 BAK1Q16611 211 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 MORN2Q502X0 79 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 VAX1Q5SQQ9 334 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 OVCH2Q7RTZ1 564 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 TOMM5Q8N4H5 51 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 OR9G1Q8NH87 305 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 FAM216AQ8WUB2 273 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 YAE1D1Q9NRH1 226 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 OR1A1Q9P1Q5 309 aa16.85■□□□□ 0.29
CLN3-212ENST00000564574 ITGB1BP1O14713 200 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 LY6G6DO95868 133 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 PMP2P02689 132 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 CD3DP04234 171 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 AKAIN1P0CW23 69 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 OR5H8P0DN80 308 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 IL7P13232 177 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 CEACAM6P40199 344 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 UBE2E1P51965 193 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 DYRK1AQ13627 763 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 MEF2DQ14814 521 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 RNASE10Q5GAN6 216 aaKnown RBP16.84■□□□□ 0.29
CLN3-212ENST00000564574 HCP5Q6MZN7 132 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 STEAP1BQ6NZ63 245 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 H1FOOQ8IZA3 346 aaPredicted RBP16.84■□□□□ 0.29
CLN3-212ENST00000564574 ABHD12Q8N2K0 398 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 OR11H6Q8NGC7 330 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 OR10V1Q8NGI7 309 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 EDARADDQ8WWZ3 215 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 LHX4Q969G2 390 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 EHFQ9NZC4 300 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 ZNF69Q9UC07 566 aa16.84■□□□□ 0.29
CLN3-212ENST00000564574 RNASEK-C17orf49H0YIS7 233 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 AVPP01185 164 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 COX7A1P24310 79 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 PPP1CCP36873 323 aaKnown RBP16.83■□□□□ 0.28
CLN3-212ENST00000564574 PRRX1P54821 245 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 KLF9Q13886 244 aaPredicted RBP16.83■□□□□ 0.28
CLN3-212ENST00000564574 GNMTQ14749 295 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 GPR157Q5UAW9 335 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 CLEC9AQ6UXN8 241 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 PNKDQ8N490 385 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 LINC00311Q8N616 119 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 BEND2Q8NDZ0 799 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 ZNF596Q8TC21 504 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 RDH8Q9NYR8 311 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 PSG11Q9UQ72 335 aa16.83■□□□□ 0.28
CLN3-212ENST00000564574 CENPVL3A0A0U1RRI6 287 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 FAM172BPA6NC97 362 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 J3QR06 171 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 J3QRK9 145 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 TOR1AO14656 332 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 RAB3DO95716 219 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 FAUP35544 74 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms