RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 OR2S2Q9NQN1 319 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 A0A1W2PRX2 142 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 TMEM14DPA8MWL7 114 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 M0QZK8 103 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 SLC17A2O00624 439 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 ZNF134P52741 427 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 QRFPP83859 136 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 EMX1Q04741 257 aaPredicted RBP12.46□□□□□ -0.41
VPS39-203ENST00000561797 CT45A1Q5HYN5 189 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 ZNF367Q7RTV3 350 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 NDUFA11Q86Y39 141 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 C1QL4Q86Z23 238 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 C8orf31Q8N9H6 132 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 ZNF439Q8NDP4 499 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 OR52L2PQ8NGH6 319 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 CT45A3Q8NHU0 189 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 TM2D1Q9BX74 207 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 ACOT13Q9NPJ3 140 aa12.46□□□□□ -0.41
VPS39-203ENST00000561797 MBNL3Q9NUK0 354 aaKnown RBP12.46□□□□□ -0.41
VPS39-203ENST00000561797 A0A0A6YYD4 124 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 ARSBP15848 533 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 CLDN12P56749 244 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 GNMTQ14749 295 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 RAB11BQ15907 218 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 SSX1Q16384 188 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 TMEM30BQ3MIR4 351 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 Q3ZCU0 254 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 MORN2Q502X0 79 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 SLC25A48Q6ZT89 311 aaKnown RBP12.45□□□□□ -0.42
VPS39-203ENST00000561797 OR51D1Q8NGF3 324 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 SETD6Q8TBK2 473 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 RTN4IP1Q8WWV3 396 aaPredicted RBP12.45□□□□□ -0.42
VPS39-203ENST00000561797 ST6GALNAC6Q969X2 333 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 R3HDM4Q96D70 268 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 URM1Q9BTM9 101 aaKnown RBP12.45□□□□□ -0.42
VPS39-203ENST00000561797 LPAR5Q9H1C0 372 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 CHMP1AQ9HD42 196 aaPredicted RBP12.45□□□□□ -0.42
VPS39-203ENST00000561797 PLEKHJ1Q9NW61 149 aa12.45□□□□□ -0.42
VPS39-203ENST00000561797 ADARB2-AS1A8MUL3 147 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 SOCS1O15524 211 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 PPP1CCP36873 323 aaKnown RBP12.44□□□□□ -0.42
VPS39-203ENST00000561797 HES5Q5TA89 166 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 C10orf99Q6UWK7 81 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 OR2W3Q7Z3T1 314 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 C5orf56Q8N8D9 126 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 RBMXL1Q96E39 390 aaKnown RBP12.44□□□□□ -0.42
VPS39-203ENST00000561797 EAF1Q96JC9 268 aaPredicted RBP12.44□□□□□ -0.42
VPS39-203ENST00000561797 V9GY05 133 aa12.44□□□□□ -0.42
VPS39-203ENST00000561797 NCBP2LA6PVI3 153 aaKnown RBP12.43□□□□□ -0.42
VPS39-203ENST00000561797 ZNF736B4DX44 427 aaPredicted RBP12.43□□□□□ -0.42
VPS39-203ENST00000561797 OPN1MWP04001 364 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 OPN1MW2P0DN77 364 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 OPN1MW3P0DN78 364 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 GABARAPL2P60520 117 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 CD83Q01151 205 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 ZNF554Q86TJ5 538 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 TGIF2LXQ8IUE1 241 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 OR2T10Q8NGZ9 312 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 GALMQ96C23 342 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 Q9H521 79 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 JPT1Q9UK76 154 aa12.43□□□□□ -0.42
VPS39-203ENST00000561797 TCRBV4S1A1TA0A5B7 111 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 FGF16O43320 207 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 CD1BP29016 333 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 VEGFCP49767 419 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 HTD2P86397 168 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 EBI3Q14213 229 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 HMGN3Q15651 99 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 C2orf76Q3KRA6 126 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 TCTEX1D4Q5JR98 221 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 IZUMO1Q8IYV9 350 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 SVOPQ8N4V2 548 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 OR4F17Q8NGA8 305 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 OR4X2Q8NGF9 303 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 IL1F10Q8WWZ1 152 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 FAM3DQ96BQ1 224 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 OR4F4Q96R69 305 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 HDHD3Q9BSH5 251 aaPredicted RBP12.42□□□□□ -0.42
VPS39-203ENST00000561797 NDUFB11Q9NX14 153 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 ABRACLQ9P1F3 81 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 AK3Q9UIJ7 227 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 LINC00527Q9UJ94 153 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 LRRC42Q9Y546 428 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 MEGF8Q7Z7M0 2845 aa12.42□□□□□ -0.42
VPS39-203ENST00000561797 PDCD5O14737 125 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 TXNL1O43396 289 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 DENRO43583 198 aaKnown RBP12.41□□□□□ -0.42
VPS39-203ENST00000561797 YPEL1O60688 119 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 RGS11O94810 467 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 NAPSAO96009 420 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 MOSP00540 346 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 MYL9P24844 172 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 PSMD7P51665 324 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 ZNF137PP52743 207 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 KHDC1LQ5JSQ8 128 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 STEAP3Q658P3 488 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 Q6ZPA2 131 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 ZNF329Q86UD4 541 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 FAM89BQ8N5H3 189 aa12.41□□□□□ -0.42
VPS39-203ENST00000561797 Q8N6K4 173 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms