RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 DEDD2Q8WXF8 326 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 C22orf15Q8WYQ4 148 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 ARL11Q969Q4 196 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 HDHD3Q9BSH5 251 aaPredicted RBP11.75□□□□□ -0.53
CPSF1-206ENST00000531480 TAF9BQ9HBM6 251 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 ZNF286AQ9HBT8 521 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 RAB9BQ9NP90 201 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 TAS2R8Q9NYW2 309 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 MGAT4AQ9UM21 535 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 TBL2Q9Y4P3 447 aaKnown RBP11.75□□□□□ -0.53
CPSF1-206ENST00000531480 CLDN34H7C241 214 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 SULT1C2O00338 296 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 SPINT2O43291 252 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 HBZP02008 142 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 COX7A1P24310 79 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 HTD2P86397 168 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 SSBP1Q04837 148 aaKnown RBP11.74□□□□□ -0.53
CPSF1-206ENST00000531480 CDNFQ49AH0 187 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 LY6G6FQ5SQ64 297 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 MINOS1Q5TGZ0 78 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 Q6YL49 198 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 RFESDQ8TAC1 157 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 ZNF418Q8TF45 676 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-206ENST00000531480 FCAMRQ8WWV6 532 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 CMSS1Q9BQ75 279 aaKnown RBP11.74□□□□□ -0.53
CPSF1-206ENST00000531480 MEGF9Q9H1U4 602 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 Q9N2K0 584 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 MRPS7Q9Y2R9 242 aaKnown RBP11.74□□□□□ -0.53
CPSF1-206ENST00000531480 MINOS1-NBL1R4GNA1 71 aa11.74□□□□□ -0.53
CPSF1-206ENST00000531480 FBN1P35555 2871 aaKnown RBP11.73□□□□□ -0.53
CPSF1-206ENST00000531480 MEIOCA2RUB1 952 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 TCF21O43680 179 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 DIRAS3O95661 229 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 DTYMKP23919 212 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 MRPS15P82914 257 aaKnown RBP11.73□□□□□ -0.53
CPSF1-206ENST00000531480 AANATQ16613 207 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 PNLIPRP3Q17RR3 467 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 Q8N402 240 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 LINC00311Q8N616 119 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 SIGLECL1Q8N7X8 197 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ZDHHC22Q8N966 263 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ZNF439Q8NDP4 499 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 OR9G1Q8NH87 305 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 OR1L1Q8NH94 360 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 C17orf50Q8WW18 174 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 MIXL1Q9H2W2 232 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ZMAT3Q9HA38 289 aaKnown RBP11.73□□□□□ -0.53
CPSF1-206ENST00000531480 SCPEP1Q9HB40 452 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ESM1Q9NQ30 184 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 GFOD1Q9NXC2 390 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 KCNIP1Q9NZI2 227 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ZNRD1Q9P1U0 126 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 ELF5Q9UKW6 265 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-206ENST00000531480 PSG11Q9UQ72 335 aa11.73□□□□□ -0.53
CPSF1-206ENST00000531480 MDFIC2A0A1B0GVS7 189 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 VGLL3A8MV65 326 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 LY6LH3BQJ8 138 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 J3QR06 171 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 UPK1BO75841 260 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 ARG1P05089 322 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 FCGR3AP08637 254 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 FBP1P09467 338 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 CD3GP09693 182 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 PRSS3P35030 304 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 HLA-DRB5Q30154 266 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 STEAP3Q658P3 488 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 MZT2BQ6NZ67 158 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 MFSD4AQ8N468 514 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 TMEM86BQ8N661 226 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 SETD6Q8TBK2 473 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 MALSU1Q96EH3 234 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 JMJD8Q96S16 334 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 SOSTQ9BQB4 213 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 TOLLIPQ9H0E2 274 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 OCEL1Q9H607 264 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 JPT1Q9UK76 154 aa11.72□□□□□ -0.53
CPSF1-206ENST00000531480 A0A1W2PRD5 423 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 A0A1W2PRF3 423 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 A0A1W2PRM7 423 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 TMEM235A6NFC5 223 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 RNF212BA8MTL3 300 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 BUB1B-PAK6H3BSN5 160 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 GABARAPH6UMI1 98 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 SDCBPO00560 298 aaPredicted RBP11.71□□□□□ -0.53
CPSF1-206ENST00000531480 VENTXO95231 258 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 EIF4EP06730 217 aaKnown RBP11.71□□□□□ -0.53
CPSF1-206ENST00000531480 NFYBP25208 207 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 FAUP35544 74 aaKnown RBP11.71□□□□□ -0.53
CPSF1-206ENST00000531480 CBX5P45973 191 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 IER3P46695 156 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 PRRX1P54821 245 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 HLA-DRB3P79483 266 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 C5orf24Q7Z6I8 188 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 LHFPL4Q7Z7J7 247 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 DYNAPQ8N1N2 210 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 MINDY2Q8NBR6 621 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 CREB3L1Q96BA8 519 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 GALMQ96C23 342 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 MMP28Q9H239 520 aa11.71□□□□□ -0.53
CPSF1-206ENST00000531480 AUNIPQ9H7T9 357 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms