RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 VAMP2P63027 116 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RHEBQ15382 184 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR5D13Q8NGL4 314 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CD300LFQ8TDQ1 290 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 NEK7Q8TDX7 302 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TAAR3PQ9P1P4 343 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RNF115Q9Y4L5 304 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CD300LBA8K4G0 201 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 H0Y980 276 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TNFSF12O43508 249 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CTXN2P0C2S0 81 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MMP9P14780 707 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RAB1AP62820 205 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 KRBOX4Q5JUW0 171 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 IL22RA1Q8N6P7 574 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR8G5Q8NG78 346 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR1J1Q8NGS3 322 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR5P3Q8WZ94 311 aa13.7□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ESPL1Q14674 2120 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ACACBO00763 2458 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ARHGAP21Q5T5U3 1957 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TRBV6-6A0A0A6YYG2 114 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 A0A0G2JRQ6 117 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 hCG_1809904A0A1W2PP81 198 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPE2 198 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 A0A1W2PR64 198 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRV1 198 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RBFOX3A6NFN3 312 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 FAM166BA8MTA8 275 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CHST1O43916 411 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 NXPH3O95157 252 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RAB5AP20339 215 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MAGEA5P43359 124 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CASP6P55212 293 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 DNLZQ5SXM8 178 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZNF324BQ6AW86 544 aaPredicted RBP13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 IL22RA2Q969J5 263 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TOLLIPQ9H0E2 274 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SMDT1Q9H4I9 107 aa13.69□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TRAV24A0A0B4J272 114 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SLC33A1O00400 549 aaPredicted RBP13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SYNGR4O95473 234 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR8U8P0C7N1 319 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RNPS1Q15287 305 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZNF880Q6PDB4 577 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZNF295-AS1Q8N0V1 137 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 FAM24BQ8N5W8 94 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 YPEL4Q96NS1 127 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TTTY12Q9BZ98 90 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TP53TG5Q9Y2B4 290 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PPIHO43447 177 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RD3LP0DJH9 198 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 WT1P19544 449 aaPredicted RBP13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MAS1LP35410 378 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RUNX1Q01196 453 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 BAXQ07812 192 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 NUFIP2Q7Z417 695 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TMEM217Q8N7C4 229 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MEGF10Q96KG7 1140 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 DDA1Q9BW61 102 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 GFOD1Q9NXC2 390 aa13.68□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 KIAA1324LA8MWY0 1029 aaPredicted RBP13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HS3ST1O14792 307 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HSPA12AO43301 675 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 F2RP25116 425 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ARR3P36575 388 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 WNT5AP41221 380 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZNF154Q13106 437 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HIKESHIQ53FT3 197 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SOHLH1Q5JUK2 328 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 CMTM1Q8IZ96 169 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 APH1AQ96BI3 265 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 MALSU1Q96EH3 234 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HIST1H2AAQ96QV6 131 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ZPBPQ9BS86 351 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RIMS4Q9H426 269 aaPredicted RBP13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 B4GALT7Q9UBV7 327 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ITPR1Q14643 2758 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 AP4M1O00189 453 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 SRP19P09132 144 aaKnown RBP13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 IGFBP7Q16270 282 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 LINC00596Q86U02 117 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 H1FOOQ8IZA3 346 aaPredicted RBP13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 C17orf78Q8N4C9 275 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 TMEM251Q8N6I4 163 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RDH5Q92781 318 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 GPR146Q96CH1 333 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PLK3Q9H4B4 646 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PLA2G3Q9NZ20 509 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 WASF3Q9UPY6 502 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR2W1Q9Y3N9 320 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PUS1Q9Y606 427 aaKnown RBP eCLIP13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 DNAJC13O75165 2243 aa13.67□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 DOCK7Q96N67 2140 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 PTPRQQ9UMZ3 2332 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 RPS23P62266 143 aaKnown RBP13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 OR1C1Q15619 314 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 C3AR1Q16581 482 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 HAGHQ16775 308 aa13.66□□□□□ -0.22
MSH5-SAPCD1-208ENST00000498473 ABHD17BQ5VST6 288 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms