RNA–Protein interactions for RNA: ENST00000495630.1

TMEM53-209, Transcript of transmembrane protein 53, human

TSL 2

Gene TMEM53, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-209	ENST00000495630	MRPS28	Q9Y2Q9	187 aa	Known RBP	13.56	□□□□□ -0.24
TMEM53-209	ENST00000495630	BIRC6	Q9NR09	4857 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	MCRIP1	C9JLW8	97 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	FADS2	O95864	444 aa	Known RBP	13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	HBZ	P02008	142 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	GTF2F2	P13984	249 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	SERPINA2	P20848	420 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	ZNF93	P35789	620 aa	Predicted RBP	13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	VEGFC	P49767	419 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	SLURP1	P55000	103 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	C6orf183	Q5T699	404 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	OR10V1	Q8NGI7	309 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	GPR148	Q8TDV2	347 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	RITA1	Q96K30	269 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	ANKRD60	Q9BZ19	345 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	ALX4	Q9H161	411 aa	Predicted RBP	13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	TPSG1	Q9NRR2	321 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	ERVK13-1	Q9NX77	482 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	GMPPB	Q9Y5P6	360 aa		13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630	EPPK1	P58107	5090 aa	Known RBP	13.55	□□□□□ -0.24
TMEM53-209	ENST00000495630		A8MZ25	164 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	OR8U9	P0C7N5	309 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	GPR176	Q14439	515 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	C5orf64	Q2M2E5	130 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	MORN2	Q502X0	79 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	TRAT1	Q6PIZ9	186 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	GAPT	Q8N292	157 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	NPB	Q8NG41	125 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	OR4C12	Q96R67	309 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	C19orf73	Q9NVV2	129 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	ORC6	Q9Y5N6	252 aa		13.54	□□□□□ -0.24
TMEM53-209	ENST00000495630	ARPC1B	O15143	372 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	NBR2	O15453	112 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	ALPL	P05186	524 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	IGHV4-30-4	P0DP06	118 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	BLVRB	P30043	206 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	BDKRB2	P30411	391 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	CRIP2	P52943	208 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	PPP3R1	P63098	170 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	C19orf54	Q5BKX5	351 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	DDI2	Q5TDH0	399 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	LYPD6	Q86Y78	171 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630		Q8N1Y9	231 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	PRR18	Q8N4B5	295 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	OR4K15	Q8NH41	348 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	OR1L1	Q8NH94	360 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	RGP1	Q92546	391 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	ARPC1A	Q92747	370 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	TMEM106A	Q96A25	262 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	FLYWCH2	Q96CP2	140 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	NABP2	Q9BQ15	211 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	CST11	Q9H112	138 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	ETAA1	Q9NY74	926 aa		13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	RCC2	Q9P258	522 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-209	ENST00000495630	SAC3D1	A6NKF1	404 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	CA11	O75493	328 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	HSPB1	P04792	205 aa	Known RBP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	LGALS1	P09382	135 aa	Known RBP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	CNTFR	P26992	372 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	GTF2A1	P52655	376 aa	Predicted RBP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	PITPNA	Q00169	270 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	RAB40B	Q12829	278 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	SRSF7	Q16629	238 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	SLC22A6	Q4U2R8	563 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	C1orf146	Q5VVC0	180 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	TCTEX1D1	Q8N7M0	179 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	MRPS24	Q96EL2	167 aa	Known RBP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630		Q96MT0	163 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	OR2S2	Q9NQN1	319 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	KIAA1456	Q9P272	454 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	AASS	Q9UDR5	926 aa		13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	FOXA2	Q9Y261	457 aa	Predicted RBP	13.52	□□□□□ -0.25
TMEM53-209	ENST00000495630	DNAH1	Q9P2D7	4330 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	IGHV4OR15-8	A0A075B7B6	117 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630		A0A087WW49	117 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630		A0A1W2PN81	502 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630		A0A1W2PP11	408 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	SOX15	O60248	233 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	NDUFA3	O95167	84 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	GABRB1	P18505	474 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	RCC1	P18754	421 aa	Predicted RBP	13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	CHRNA7	P36544	502 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	ADARB1	P78563	741 aa	Known RBP	13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	TMEM267	Q0VDI3	215 aa	Predicted RBP	13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	CCDC58	Q4VC31	144 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	RAB12	Q6IQ22	244 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	RPL22L1	Q6P5R6	122 aa	Known RBP	13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	ZNF554	Q86TJ5	538 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	ODF3L1	Q8IXM7	274 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	ELOVL1	Q9BW60	279 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	TAF9B	Q9HBM6	251 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	MRPS18A	Q9NVS2	196 aa	Known RBP	13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	NUBP2	Q9Y5Y2	271 aa		13.51	□□□□□ -0.25
TMEM53-209	ENST00000495630	HSPA12A	O43301	675 aa		13.5	□□□□□ -0.25
TMEM53-209	ENST00000495630	GLA	P06280	429 aa		13.5	□□□□□ -0.25
TMEM53-209	ENST00000495630	ZIK1	Q3SY52	487 aa	Predicted RBP	13.5	□□□□□ -0.25
TMEM53-209	ENST00000495630	LY6G6F	Q5SQ64	297 aa		13.5	□□□□□ -0.25
TMEM53-209	ENST00000495630	PYHIN1	Q6K0P9	492 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms