RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 F2RL2O00254 374 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 IGHV4-39P01824 125 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 COL8A1P27658 744 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 GNMTQ14749 295 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 C17orf58Q2M2W7 97 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 NLRC3Q7RTR2 1065 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 OR8B3Q8NGG8 313 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 OR10V1Q8NGI7 309 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 ZNF486Q96H40 463 aaPredicted RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 OR8B2Q96RD0 313 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 SLC5A7Q9GZV3 580 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 OR2S2Q9NQN1 319 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 CLN8Q9UBY8 286 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 CYSRT1A8MQ03 144 aa17.9■□□□□ 0.46
SMC4-221ENST00000489573 VAMP1P23763 118 aa17.9■□□□□ 0.46
SMC4-221ENST00000489573 LUMP51884 338 aaPredicted RBP17.9■□□□□ 0.46
SMC4-221ENST00000489573 NEIL1Q96FI4 390 aaPredicted RBP17.9■□□□□ 0.46
SMC4-221ENST00000489573 TAS2R3Q9NYW6 316 aa17.9■□□□□ 0.46
SMC4-221ENST00000489573 JPT1Q9UK76 154 aa17.9■□□□□ 0.46
SMC4-221ENST00000489573 C9orf170A2RU37 121 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 PIGPP57054 158 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 FCN2Q15485 313 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 LTC4SQ16873 150 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 ZNF841Q6ZN19 808 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 PARP12Q9H0J9 701 aaKnown RBP17.89■□□□□ 0.45
SMC4-221ENST00000489573 SLC2A9Q9NRM0 540 aa17.89■□□□□ 0.45
SMC4-221ENST00000489573 TRBV23-1A0A0A0MS06 115 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 IGHV3-43A0A0B4J1X8 118 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 CCNKO75909 580 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 WNT2P09544 360 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 IGHV3-43DP0DP04 118 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 GNRHRP30968 328 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 PPP1CCP36873 323 aaKnown RBP17.88■□□□□ 0.45
SMC4-221ENST00000489573 ZNF273Q14593 569 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 TMEM30BQ3MIR4 351 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 PHLDA2Q53GA4 152 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 LDLRAD3Q86YD5 345 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 FAM185AQ8N0U4 392 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 ZNF525Q8N782 197 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 CCDC71LQ8N9Z2 235 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 GAL3ST2Q9H3Q3 398 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 LINC00574Q9H8X3 128 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 GNG12Q9UBI6 72 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 RBM7Q9Y580 266 aaKnown RBP17.88■□□□□ 0.45
SMC4-221ENST00000489573 KIAA2026Q5HYC2 2103 aa17.88■□□□□ 0.45
SMC4-221ENST00000489573 GPR31O00270 319 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 GPR37O15354 613 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 SFT2D2O95562 160 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 FAM53AQ6NSI3 398 aaPredicted RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 ZNF818PQ6ZRF7 136 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 SGPP2Q8IWX5 399 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 C12orf45Q8N5I9 185 aaPredicted RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 ZNF714Q96N38 554 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 PATZ1Q9HBE1 687 aaKnown RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 CCL28Q9NRJ3 127 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 IDI2-AS1Q9NZ38 188 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 USF3Q68DE3 2245 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 CRYM-AS1A6NIL9 109 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 HSD17B6O14756 317 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 DUS4LO95620 317 aaKnown RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 SULT1A3P0DMM9 295 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 SULT1A4P0DMN0 295 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 OMGP23515 440 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 PDLIM4P50479 330 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 LOXL3P58215 753 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 SUPT4H1P63272 117 aaKnown RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 TMEM200BQ69YZ2 307 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 OR11H7Q8NGC8 314 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 CASTOR1Q8WTX7 329 aa17.87■□□□□ 0.45
SMC4-221ENST00000489573 RTN4IP1Q8WWV3 396 aaPredicted RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 BARX1Q9HBU1 254 aaPredicted RBP17.87■□□□□ 0.45
SMC4-221ENST00000489573 TEX13DA0A0J9YY54 714 aaPredicted RBP17.86■□□□□ 0.45
SMC4-221ENST00000489573 F5H0A9 414 aaPredicted RBP17.86■□□□□ 0.45
SMC4-221ENST00000489573 YPEL1O60688 119 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 OR8U9P0C7N5 309 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 CD34P28906 385 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 RND3P61587 244 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 C11orf88Q6PI97 169 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 OR8U1Q8NH10 309 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 MITD1Q8WV92 249 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 PPP1R14BQ96C90 147 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 YPEL2Q96QA6 119 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 NARFLQ9H6Q4 476 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 NAA60Q9H7X0 242 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 DSCAML1Q8TD84 2053 aa17.86■□□□□ 0.45
SMC4-221ENST00000489573 UTP20O75691 2785 aaKnown RBP17.86■□□□□ 0.45
SMC4-221ENST00000489573 A8MV72 311 aaPredicted RBP17.85■□□□□ 0.45
SMC4-221ENST00000489573 RGS11O94810 467 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 SSTR2P30874 369 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 CD300CQ08708 224 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 SLC9A3R2Q15599 337 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 WDR25Q64LD2 544 aaPredicted RBP17.85■□□□□ 0.45
SMC4-221ENST00000489573 UXS1Q8NBZ7 420 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 OR2AK2Q8NG84 335 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 OR10A7Q8NGE5 316 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 FAM216AQ8WUB2 273 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 EDARADDQ8WWZ3 215 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 PHB2Q99623 299 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 GFOD1Q9NXC2 390 aa17.85■□□□□ 0.45
SMC4-221ENST00000489573 KCNS2Q9ULS6 477 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms