RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 LYL1P12980 280 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 RUNX1Q01196 453 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 TLE1Q04724 770 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 PJVKQ0ZLH3 352 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 HABP2Q14520 560 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 PRR30Q53SZ7 412 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 DPPA2Q7Z7J5 298 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 LGI3Q8N145 548 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 FAM58AQ8N1B3 248 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 EDARADDQ8WWZ3 215 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 OR51M1Q9H341 326 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 MSL2Q9HCI7 577 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 GLRX2Q9NS18 164 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 TUBD1Q9UJT1 453 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 ASH1LQ9NR48 2969 aaKnown RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 DEGS1O15121 323 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 HSPA12AO43301 675 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 WDR1O75083 606 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 CA11O75493 328 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 S100PP25815 95 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 RPS16P62249 146 aaKnown RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 SSX2Q16385 188 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 MIDNQ504T8 468 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 PCSK4Q6UW60 755 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 FAM180AQ6UWF9 173 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 IGFL2Q6UWQ7 119 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 UNQ6494/PRO21346Q6UXR6 183 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 TMEM182Q6ZP80 229 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 FAM214BQ7L5A3 538 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 BCL2L2Q92843 193 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 EIF5A2Q9GZV4 153 aaKnown RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 OPN3Q9H1Y3 402 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 CLCF1Q9UBD9 225 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 MYO18BQ8IUG5 2567 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 NAPSAO96009 420 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 SFTA3P0C7M3 94 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 ARR3P36575 388 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 KIR2DL2P43627 348 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 NAAAQ02083 359 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 PEA15Q15121 130 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 OR5A2Q8NGI9 324 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 SLC25A40Q8TBP6 338 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 ZCCHC14Q8WYQ9 949 aaKnown RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 GALNT14Q96FL9 552 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 GMPPAQ96IJ6 420 aaPredicted RBP8.03□□□□□ -1.12
CUX1-206ENST00000437600 DNAJB11Q9UBS4 358 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 ZNF391Q9UJN7 358 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 FBXO7Q9Y3I1 522 aa8.03□□□□□ -1.12
CUX1-206ENST00000437600 ARFGEF3Q5TH69 2177 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 CHD6Q8TD26 2715 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 E5RGE8 158 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 CHST1O43916 411 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 IGHG3P01860 377 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 PSG2P11465 335 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 GPX4P36969 197 aaPredicted RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 MPV17P39210 176 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 UBE2NP61088 152 aaKnown RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 CCL20P78556 96 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 LTC4SQ16873 150 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 EIF2S3LQ2VIR3 472 aaKnown RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 Q6ZRM9 215 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 SCCPDHQ8NBX0 429 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 OR1J1Q8NGS3 322 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 RFESDQ8TAC1 157 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 PLPPR1Q8TBJ4 325 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 MRPL30Q8TCC3 161 aaKnown RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 TMEM171Q8WVE6 324 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 RARRES2Q99969 163 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 RSRP1Q9BUV0 290 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 TMEM222Q9H0R3 208 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 RYDENQ9NUL5 291 aaKnown RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 IL36GQ9NZH8 169 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 NSG2Q9Y328 171 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 MAP1AP78559 2803 aaPredicted RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 IGSF23A1L1A6 192 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 C1orf196B1AJZ1 125 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 MKRN2OSH3BPM6 223 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 H7C1Q1 480 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 JTBO76095 146 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 NKX2-1P43699 371 aaPredicted RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 FABP9Q0Z7S8 132 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 PSG7Q13046 419 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 ZNF154Q13106 437 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 GNMTQ14749 295 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 C9orf152Q5JTZ5 239 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 SELENOHQ8IZQ5 122 aaKnown RBP8.02□□□□□ -1.13
CUX1-206ENST00000437600 CCDC54Q8NEL0 328 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 ISOC2Q96AB3 205 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 SMIM8Q96KF7 97 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 NRIP2Q9BQI9 281 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 OBP2BQ9NPH6 170 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 MMP26Q9NRE1 261 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 TRAPPC2LQ9UL33 140 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 SSUH2Q9Y2M2 353 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 HIVEP3Q5T1R4 2406 aa8.02□□□□□ -1.13
CUX1-206ENST00000437600 ABCA4P78363 2273 aa8.01□□□□□ -1.13
CUX1-206ENST00000437600 DEFB108AA8MXU0 73 aa8.01□□□□□ -1.13
CUX1-206ENST00000437600 TRDCB7Z8K6 153 aa8.01□□□□□ -1.13
CUX1-206ENST00000437600 PGLYRP1O75594 196 aaPredicted RBP8.01□□□□□ -1.13
CUX1-206ENST00000437600 IGHV2-70P01814 119 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms