RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ZNF488Q96MN9 340 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 NUDT16L1Q9BRJ7 211 aaKnown RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 IL19Q9UHD0 177 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 CYB5R3P00387 301 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 ZNF596Q8TC21 504 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 ALX3O95076 343 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 ISG15P05161 165 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 SLC38A6Q8IZM9 456 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 OR1B1Q8NGR6 318 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 PTBP3O95758 552 aaKnown RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 FAM3AP98173 230 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 FAHD2BQ6P2I3 314 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 FAHD2AQ96GK7 314 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 MRPL13Q9BYD1 178 aaKnown RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 COA4Q9NYJ1 87 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 A0A1W2PNU3 283 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 FFAR4Q5NUL3 377 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 NUP214P35658 2090 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-207ENST00000429896 PI4KAP42356 2102 aa11.1□□□□□ -0.63
PTCH1-207ENST00000429896 RPL36A-HNRNPH2H7BZ11 118 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 PYCARD-AS1I3L0S3 204 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 SEMA7AO75326 666 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 PSMB6P28072 239 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 C1QTNF12Q5T7M4 302 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 NCR3LG1Q68D85 454 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 MIOXQ9UGB7 285 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 V9GYH0 126 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 FANCMQ8IYD8 2048 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 XKRY2A2RUG3 117 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 DHRS7CA6NNS2 312 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 GIPP09681 153 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-207ENST00000429896 GZMHP20718 246 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 VMA21Q3ZAQ7 101 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 ZNF260Q3ZCT1 412 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 TMEM229BQ8NBD8 167 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 SPTBP11277 2137 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 TMPRSS5Q9H3S3 457 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 G6PC2Q9NQR9 355 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 AUP1Q9Y679 476 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 TRAV8-7A0A075B6U6 113 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 CELA3BP08861 270 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 PIGYQ3MUY2 71 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 ZIC4Q8N9L1 334 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 DENND4CQ5VZ89 1909 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 RP1P56715 2156 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 TRAV34A0A0B4J273 112 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 ZNF826PQ6ZT77 177 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 FAM219AQ8IW50 185 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 OR4C16Q8NGL9 310 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 GPX8Q8TED1 209 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 CABLES2Q9BTV7 478 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 PKIBQ9C010 78 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 AAMDCQ9H7C9 122 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 RASL12Q9NYN1 266 aa11.09□□□□□ -0.63
PTCH1-207ENST00000429896 SPP1P10451 314 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 BRS3P32247 399 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 RTN4IP1Q8WWV3 396 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 PCGF1Q9BSM1 259 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 OR2D2Q9H210 308 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 CBLN4Q9NTU7 201 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 FSTP19883 344 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 COX5AP20674 150 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 G6PCP35575 357 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 CNN1P51911 297 aaKnown RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 DHODHQ02127 395 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 WDR89Q96FK6 387 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 F2RL2O00254 374 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 ADAM10O14672 748 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 SMAD7O15105 426 aaKnown RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 RPL7P18124 248 aaKnown RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 GZMKP49863 264 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 TNXAQ16473 311 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 SMIM4Q8WVI0 70 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 PPP1R1CQ8WVI7 109 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 LALBAP00709 142 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 USF1P22415 310 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 RPL31P62899 125 aaKnown RBP11.08□□□□□ -0.64
PTCH1-207ENST00000429896 KIAA1549LQ6ZVL6 1849 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 FA2HQ7L5A8 372 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 WFIKKN1Q96NZ8 548 aa11.08□□□□□ -0.64
PTCH1-207ENST00000429896 E5RGE8 158 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 ERVS71-1P61550 626 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 TMEM147Q9BVK8 224 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 NSG2Q9Y328 171 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 LSM2Q9Y333 95 aaKnown RBP11.07□□□□□ -0.64
PTCH1-207ENST00000429896 CA11O75493 328 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 MS4A7Q9GZW8 240 aaPredicted RBP11.07□□□□□ -0.64
PTCH1-207ENST00000429896 NPY1RP25929 384 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 RBM11P57052 281 aaKnown RBP11.07□□□□□ -0.64
PTCH1-207ENST00000429896 IL13RA2Q14627 380 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 SIRT4Q9Y6E7 314 aaPredicted RBP11.07□□□□□ -0.64
PTCH1-207ENST00000429896 TRDCB7Z8K6 153 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 JTBO76095 146 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 IGHV1-18A0A0C4DH31 117 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 LOC390937A0A1W2PQ73 354 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 CEACAM4O75871 244 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 SNRPCP09234 159 aaKnown RBP11.07□□□□□ -0.64
PTCH1-207ENST00000429896 PMELP40967 661 aa11.07□□□□□ -0.64
PTCH1-207ENST00000429896 LPAR6P43657 344 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms