RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 MEF2BQ02080 365 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-207ENST00000422797 PLP2Q04941 152 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM267Q0VDI3 215 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-207ENST00000422797 WDR25Q64LD2 544 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-207ENST00000422797 SSX9Q7RTT3 188 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 FAM58AQ8N1B3 248 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 ABHD5Q8WTS1 349 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 OR5P3Q8WZ94 311 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 TAF15Q92804 592 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIMS1-207ENST00000422797 RAB24Q969Q5 203 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 HIST1H2BLQ99880 126 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 SSX3Q99909 188 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 SMIM7Q9BQ49 75 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 GPR87Q9BY21 358 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF665Q9H7R5 613 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 SLC39A9Q9NUM3 307 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 MTCH1Q9NZJ7 389 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 CACNG5Q9UF02 275 aa9.39□□□□□ -0.91
LIMS1-207ENST00000422797 LRRC3CA6NJW4 275 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 PPP5D1E7EU14 171 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 G3V3Y1 287 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 H7BYZ3 331 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 J3QT63 122 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF737O75373 536 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 SYNGR4O95473 234 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 HLA-HP01893 362 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 PATE4P0C8F1 98 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 PSG2P11465 335 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 FOSL1P15407 271 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CCKARP32238 428 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 ARF1P84077 181 aaKnown RBP9.38□□□□□ -0.91
LIMS1-207ENST00000422797 PDCD1Q15116 288 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 RSPO4Q2I0M5 234 aaPredicted RBP9.38□□□□□ -0.91
LIMS1-207ENST00000422797 BSXQ3C1V8 233 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 LCN15Q6UWW0 184 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF295-AS1Q8N0V1 137 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 BEND2Q8NDZ0 799 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CPEB3Q8NE35 698 aaKnown RBP9.38□□□□□ -0.91
LIMS1-207ENST00000422797 OR1P1Q8NH06 330 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 FGFBP3Q8TAT2 258 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 IFI44Q8TCB0 444 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 LHX4Q969G2 390 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 C14orf144Q96I85 54 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 GUCD1Q96NT3 240 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CIB3Q96Q77 187 aaPredicted RBP9.38□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF576Q9H609 170 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CHODLQ9H9P2 273 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 B4GALT7Q9UBV7 327 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 PRSS50Q9UI38 385 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 TTC28Q96AY4 2481 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 UNC13CQ8NB66 2214 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CEP192Q8TEP8 1941 aa9.38□□□□□ -0.91
LIMS1-207ENST00000422797 CCDC163A0A0D9SF12 145 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 HRASP01112 189 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 TYMSP04818 313 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 SERPINA7P05543 415 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 PFN1P07737 140 aaKnown RBP9.37□□□□□ -0.91
LIMS1-207ENST00000422797 CD99P14209 185 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 HOXA6P31267 233 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 NTF4P34130 210 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 PDLIM4P50479 330 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 GFRA1P56159 465 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 ZFP36L1Q07352 338 aaKnown RBP9.37□□□□□ -0.91
LIMS1-207ENST00000422797 SLC38A11Q08AI6 406 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 KCNIP4Q6PIL6 250 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM14EPQ6UXP3 125 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 OR51H1Q8NH63 302 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 C2orf88Q9BSF0 95 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 RSG1Q9BU20 258 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM147Q9BVK8 224 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 ERRFI1Q9UJM3 462 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-207ENST00000422797 POLDIP2Q9Y2S7 368 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 RFNGQ9Y644 331 aa9.37□□□□□ -0.91
LIMS1-207ENST00000422797 TNRC6AQ8NDV7 1962 aaKnown RBP9.37□□□□□ -0.91
LIMS1-207ENST00000422797 A0A087X0M5 115 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 A0A0G2JRQ6 117 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 A0A1B0GX30 115 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 C5orf49A4QMS7 147 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 ARGFXA6NJG6 315 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 B4E171 279 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 K7ESF4 209 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 NTN3O00634 580 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-207ENST00000422797 GDF1P27539 372 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 IL2RGP31785 369 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 TSPAN7P41732 249 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 LCN2P80188 198 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 GAMTQ14353 236 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 HNF4GQ14541 408 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 ZNF726P1Q15940 193 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM249Q2WGJ8 235 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 CISD2Q8N5K1 135 aaKnown RBP9.36□□□□□ -0.91
LIMS1-207ENST00000422797 OR4X1Q8NH49 305 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 TMEM170AQ8WVE7 144 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 NANOS1Q8WY41 292 aaKnown RBP9.36□□□□□ -0.91
LIMS1-207ENST00000422797 IMMP2LQ96T52 175 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 TXNDC17Q9BRA2 123 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 MRPL37Q9BZE1 423 aaKnown RBP9.36□□□□□ -0.91
LIMS1-207ENST00000422797 OR51I2Q9H344 312 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 DLL3Q9NYJ7 618 aa9.36□□□□□ -0.91
LIMS1-207ENST00000422797 LAMP3Q9UQV4 416 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms