RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CR1LQ2VPA4 569 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 CD276Q5ZPR3 534 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 C11orf88Q6PI97 169 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 H1FOOQ8IZA3 346 aaPredicted RBP14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 SLC38A6Q8IZM9 456 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 FXYD6Q9H0Q3 95 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 RDH8Q9NYR8 311 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 IDI2-AS1Q9NZ38 188 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 JPT1Q9UK76 154 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 VSIG4Q9Y279 399 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 OR2W1Q9Y3N9 320 aa14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 YLPM1P49750 1951 aaKnown RBP14.16□□□□□ -0.14
CCDC28B-202ENST00000421922 IGHV3-43A0A0B4J1X8 118 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 F5H0A9 414 aaPredicted RBP14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 IGHV3-43DP0DP04 118 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 ANXA7P20073 488 aaKnown RBP14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 LUMP51884 338 aaPredicted RBP14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 C4orf46Q504U0 113 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 AADACL3Q5VUY0 350 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF660Q6AZW8 331 aaPredicted RBP14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 OR52L2PQ8NGH6 319 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 OR10V1Q8NGI7 309 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 C10orf105Q8TEF2 133 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 SECTM1Q8WVN6 248 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 EDARADDQ8WWZ3 215 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 SLC5A7Q9GZV3 580 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 KCNS2Q9ULS6 477 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 F2RL2O00254 374 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 TUSC2O75896 110 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 IGHV2-5P01817 119 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 NFYBP25208 207 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 PPP1CCP36873 323 aaKnown RBP14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 KRTAP10-9P60411 292 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 CBX3Q13185 183 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF273Q14593 569 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 METTL11BQ5VVY1 283 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 TMEM200BQ69YZ2 307 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 ZNF841Q6ZN19 808 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 ALG5Q9Y673 324 aa14.15□□□□□ -0.14
CCDC28B-202ENST00000421922 CELSR2Q9HCU4 2923 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 ABCA12Q86UK0 2595 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 hCG_1809904A0A1W2PP81 198 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 A0A1W2PPE2 198 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 A0A1W2PR64 198 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 A0A1W2PRV1 198 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 CTSDP07339 412 aaPredicted RBP14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 AKR1C4P17516 323 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 OMGP23515 440 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 UCP3P55916 312 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 GNMTQ14749 295 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 C17orf58Q2M2W7 97 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 DEFB113Q30KQ7 82 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 PRAMEF5Q5TYX0 476 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 TCF23Q7RTU1 214 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 CCDC71LQ8N9Z2 235 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 OR10A7Q8NGE5 316 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 MRGPRFQ96AM1 343 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 RPUSD1Q9UJJ7 312 aaKnown RBP14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 GPR132Q9UNW8 380 aa14.14□□□□□ -0.15
CCDC28B-202ENST00000421922 LOC105371242A0A075B767 164 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 PPIAL4CA0A0B4J2A2 164 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 PHF1O43189 567 aaPredicted RBP14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CREBL2O60519 120 aaPredicted RBP14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 FCN3O75636 299 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 LIPFP07098 398 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 PPIAL4GP0DN37 164 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CCL3L1P16619 93 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 UBE2MP61081 183 aaKnown RBP14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CLEC12BQ2HXU8 276 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 C11orf91Q3C1V1 193 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CMTM1Q8IZ96 169 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 OR2AK2Q8NG84 335 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CLDND2Q8NHS1 167 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 ZNF486Q96H40 463 aaPredicted RBP14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 GFOD1Q9NXC2 390 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 CRYBG3Q68DQ2 2970 aa14.13□□□□□ -0.15
CCDC28B-202ENST00000421922 TEX13DA0A0J9YY54 714 aaPredicted RBP14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 SSNA1O43805 119 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 YPEL1O60688 119 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 IL5P05113 134 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 OR4E1P0C645 316 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 CGB3P0DN86 165 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 CGB7P0DN87 165 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 SLC25A16P16260 332 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 PI3P19957 117 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 VAMP1P23763 118 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 MECP2P51608 486 aaKnown RBP14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 FAHD2BQ6P2I3 314 aaPredicted RBP14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 HEPN1Q6WQI6 88 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 GLDNQ6ZMI3 551 aaPredicted RBP14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 SLC25A42Q86VD7 318 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 LRRC75A-AS1Q8N1F1 130 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 OR52M1Q8NGK5 317 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 FAM216AQ8WUB2 273 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 FAHD2AQ96GK7 314 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 YPEL2Q96QA6 119 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 C5orf66Q9H5L9 145 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 ONECUT1Q9UBC0 465 aa14.12□□□□□ -0.15
CCDC28B-202ENST00000421922 MALRD1Q5VYJ5 2156 aa14.11□□□□□ -0.15
CCDC28B-202ENST00000421922 GPR31O00270 319 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms