RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CST4P01036 141 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 MUC1P15941 1255 aaPredicted RBP5.16□□□□□ -1.58
USP40-202ENST00000409945 WNT4P56705 351 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 GNG3P63215 75 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 ZNF45Q02386 682 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 PRDX4Q13162 271 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 MAB21L1Q13394 359 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 SMUG1Q53HV7 270 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 TMEM255AQ5JRV8 349 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 ZNF684Q5T5D7 378 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 PRAMEF6Q5VXH4 476 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 BPIFB2Q8N4F0 458 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 LRTM2Q8N967 370 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 OR8B12Q8NGG6 310 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 RNF170Q96K19 258 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 TECTBQ96PL2 329 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 AMELYQ99218 206 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 TBX5Q99593 518 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 SUCNR1Q9BXA5 334 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 OR51E2Q9H255 320 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 METTL17Q9H7H0 456 aaPredicted RBP5.16□□□□□ -1.58
USP40-202ENST00000409945 ADGRL4Q9HBW9 690 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 NUFIP1Q9UHK0 495 aaKnown RBP5.16□□□□□ -1.58
USP40-202ENST00000409945 OR52A1Q9UKL2 312 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 SLC7A11Q9UPY5 501 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 AUP1Q9Y679 476 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 R4GMQ9 66 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 MALRD1Q5VYJ5 2156 aa5.16□□□□□ -1.58
USP40-202ENST00000409945 A0A075B6Q4 140 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 IGHV3-64DA0A0J9YX35 117 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 DHRS7CA6NNS2 312 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 ZNF850A8MQ14 1090 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 RNF212BA8MTL3 300 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 A8MXK9 166 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 CTDSPLO15194 276 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 ENSAO43768 121 aaKnown RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 GATBO75879 557 aaKnown RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 DHRS3O75911 302 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 RPP14O95059 124 aaKnown RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 ECDO95905 644 aaPredicted RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 CYB5AP00167 134 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 UBCP0CG48 685 aaKnown RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 SPP1P10451 314 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 PSKH1P11801 424 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 HCCSP53701 268 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 SSX1Q16384 188 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 PLCXD3Q63HM9 321 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 RUSC1-AS1Q66K80 236 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 ZNF573Q86YE8 665 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 DEFB108BQ8NET1 73 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 OR1M1Q8NGA1 313 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 OR5A2Q8NGI9 324 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 OR10Z1Q8NGY1 313 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 OR51E1Q8TCB6 317 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 LRRC29Q8WV35 223 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 PRAC1Q96KF2 57 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 TMEM246Q9BRR3 403 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 C6orf62Q9GZU0 229 aaPredicted RBP5.15□□□□□ -1.58
USP40-202ENST00000409945 GPR84Q9NQS5 396 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 FAM206AQ9NX38 181 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 GNG8Q9UK08 70 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 SSR3Q9UNL2 185 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 PIGLQ9Y2B2 252 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 POLDIP2Q9Y2S7 368 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 RHBDD3Q9Y3P4 386 aa5.15□□□□□ -1.58
USP40-202ENST00000409945 LOC105371242A0A075B767 164 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 SYT7O43581 403 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 NRASP01111 189 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 RLN1P04808 185 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 WNT2P09544 360 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 ETV6P41212 452 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 TPBGQ13641 420 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 MPPED2Q15777 294 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 TRIM16LQ309B1 348 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 CEACAM21Q3KPI0 293 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 LRRC10Q5BKY1 277 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 SPANXN2Q5MJ10 180 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 CLVS2Q5SYC1 327 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 TMEM244Q5VVB8 128 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 ETFRF1Q6IPR1 90 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 ZNF600Q6ZNG1 722 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 ELMOD2Q8IZ81 293 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 CENPSQ8N2Z9 138 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 ACBD7Q8N6N7 88 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 OR52N1Q8NH53 320 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 THRSPQ92748 146 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 UFD1Q92890 307 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 C10orf35Q96D05 121 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 TTTY10Q9BZA0 68 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 DNTTIP1Q9H147 329 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 EXOSC4Q9NPD3 245 aaKnown RBP5.15□□□□□ -1.59
USP40-202ENST00000409945 INPP5EQ9NRR6 644 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 CLEC2DQ9UHP7 191 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 KLHDC2Q9Y2U9 406 aa5.15□□□□□ -1.59
USP40-202ENST00000409945 TRAV24A0A0B4J272 114 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 A0A1W2PQL4 384 aaPredicted RBP5.14□□□□□ -1.59
USP40-202ENST00000409945 CDIPTO14735 213 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 ATP6V0E1O15342 81 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 PHF1O43189 567 aaPredicted RBP5.14□□□□□ -1.59
USP40-202ENST00000409945 NDUFB3O43676 98 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms