RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SHARPINQ9H0F6 387 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 SPEF1Q9Y4P9 236 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 BSNQ9UPA5 3926 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 MED6O75586 246 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 SSTR5P35346 364 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 LINC00205P59089 165 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 VAMP2P63027 116 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 BTN1A1Q13410 526 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 BTNL3Q6UXE8 466 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 NINJ1Q92982 152 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 OR2V2Q96R30 315 aa9.39□□□□□ -0.91
TCOF1-203ENST00000394269 USB1Q9BQ65 265 aaKnown RBP9.39□□□□□ -0.91
TCOF1-203ENST00000394269 TRIM77I1YAP6 450 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 UCP3P55916 312 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 IL15RAQ13261 267 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 KRBOX4Q5JUW0 171 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 C11orf53Q8IXP5 236 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 ZNRF1Q8ND25 227 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 OR4A4PQ8NGN8 299 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 C18orf12Q96KH6 178 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 FAM234AQ9H0X4 552 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 TRBV6-7A0A0A0MS04 114 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 RBMXL2O75526 392 aaKnown RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 PRH1P02810 166 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 HOXB1P14653 301 aaPredicted RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 PPP1CCP36873 323 aaKnown RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 ERVK11-1P61568 191 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 DOLPP1Q86YN1 238 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 SELENOHQ8IZQ5 122 aaKnown RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 BVESQ8NE79 360 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 C1orf162Q8NEQ5 155 aaPredicted RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 ARL11Q969Q4 196 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 AQP10Q96PS8 301 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 TREM1Q9NP99 234 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 TMED3Q9Y3Q3 217 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 RFNGQ9Y644 331 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 DOPEY2Q9Y3R5 2298 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 E5RGE8 158 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 PRSS44E7EML9 344 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 AKIRIN2Q53H80 203 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 ZNF324BQ6AW86 544 aaPredicted RBP9.38□□□□□ -0.91
TCOF1-203ENST00000394269 RNF141Q8WVD5 230 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 GALMQ96C23 342 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 NSG2Q9Y328 171 aa9.38□□□□□ -0.91
TCOF1-203ENST00000394269 H7C1Q1 480 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 TSPAN4O14817 238 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 C1QL1O75973 258 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 F2RP25116 425 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 KLF3P57682 345 aaPredicted RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ZNF616Q08AN1 781 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 SWI5Q1ZZU3 235 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ACP7Q6ZNF0 438 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ZNF497Q6ZNH5 498 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 LINC00596Q86U02 117 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 SNRNP40Q96DI7 357 aaKnown RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 RBMXL1Q96E39 390 aaKnown RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 WASF3Q9UPY6 502 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 AMDHD2Q9Y303 409 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 J3QW42 95 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 FHITP49789 147 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ZNF146Q15072 292 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 FAM57AQ8TBR7 257 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 OR2D2Q9H210 308 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 TUBD1Q9UJT1 453 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 FAM96BQ9Y3D0 163 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 TMEM30CPA0ZSE6 113 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 C12orf77C9JDV5 145 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 CHST1O43916 411 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 KRASP01116 189 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 HOXD4P09016 255 aaPredicted RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 SELLP14151 372 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 EGR1P18146 543 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 SELENOVP59797 346 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 CCL8P80075 99 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ZNF816Q0VGE8 651 aaPredicted RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 SMIM21Q3B7S5 101 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 KRTCAP3Q53RY4 240 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 TIMM23BQ5SRD1 257 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 BPIFCQ8NFQ6 507 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 LILRB1Q8NHL6 650 aaPredicted RBP9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ITLN1Q8WWA0 313 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 MARVELD3Q96A59 401 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 ABHD14BQ96IU4 210 aa9.37□□□□□ -0.91
TCOF1-203ENST00000394269 DOCK11Q5JSL3 2073 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 TUBAL3A6NHL2 446 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 TMEM210A6NLX4 147 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 HBZP02008 142 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 IAPPP10997 89 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 PRDX2P32119 198 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 SRSF3P84103 164 aaKnown RBP9.36□□□□□ -0.91
TCOF1-203ENST00000394269 TESK1Q15569 626 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 H1FOOQ8IZA3 346 aaPredicted RBP9.36□□□□□ -0.91
TCOF1-203ENST00000394269 FAM185AQ8N0U4 392 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 MARC2Q969Z3 335 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 A0A0G2JNJ9 132 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 A0A0G2JRQ6 117 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 A8MXE2 369 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 IGLV1-44P01699 117 aa9.36□□□□□ -0.91
TCOF1-203ENST00000394269 PVALBP20472 110 aaPredicted RBP9.36□□□□□ -0.91
TCOF1-203ENST00000394269 KCNJ3P48549 501 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms